Difference between revisions of "Part:BBa K2039000"
 
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This part is the complementary part of Bba_K2039001.  
 
This part is the complementary part of Bba_K2039001.  
  
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The FRB/FKBP12 system is an inducible system. Originally found in mammals, these two proteins form an heterodimer when rapamycin is added in the middle, it is particularly used in protein interaction studies. The FRB sequence has been modified in order to dimerize with a non toxic rapamycin analog (rapalog). The mutations introduced are : T2098L, K2095P, W2101F. It has also been codon optimized with Jcat plateforme to be expressed in bacteria.
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The FRB/FKBP12 system is an inducible dimerization system. Originally found in mammals, these two proteins form an heterodimer when rapamycin is added in the medium. It is particularly useful for protein interaction studies. The FRB sequence has been modified in order to dimerize with a non toxic rapamycin analog (rapalog). The mutations introduced are : T2098L, K2095P, W2101F. It has also been codon optimized with Jcat plateforme to be expressed in bacteria.
  
 
FKBP protein is linked to GFP 10.
 
FKBP protein is linked to GFP 10.
  
 
The tripartite split-GFP is composed of two times of 20 amino-acids long GFP tags (GFP 10 and GFP 11) and a third complementary subsection (GFP 1-9).  
 
The tripartite split-GFP is composed of two times of 20 amino-acids long GFP tags (GFP 10 and GFP 11) and a third complementary subsection (GFP 1-9).  
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==Characterization==
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====Test of the dimerization system with a tripartite GFP====
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We transformed E.coli with pSB1C3 coding for FKBP-GFP10 and FRB-GFP11 and pUC19 coding for the third part of GFP as we could not clone GFP1.9 in pSB1C3. Transformed cells where then incubated with the dimerization agent, rapalog. We try several concentration of rapalog but we did not see any GFP fluorescence with flow cytometer.
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[[File: T--Paris_Saclay--Testbiobrick1.png|500px|centre|]]
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<center><b>Figure 5:</b> : No GFP florescence is observe with rapalog
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All the rapalog concentrations tested (5nM, 50nM, 500nM) display a signal inferior compared to the negative control. </center>
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We did not obtain the fluorescent signal that we expected with the dimerization agent. We thought that maybe the rapalog does not penetrate into the cell. We made a second test with cell lysate in order to address this issue.
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Results are displayed on the plot below, each measurement was made in triplicate. We observe a slight difference between the mean fluorescence of the control (72,33 +/- 6,29) and the mean fluorescence with 150nM rapalog (85,33 +/- 2,36).
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[[File: Paris-Saclay-Characterization.png|400px|centre|]]
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We observed a weak difference between the control and the induced samples. This difference may be more important if we consider a possible degradation of GFP parts during the lysate preparation. This experiment should be repeated for a more complete characterization.
  
 
<!-- Add more about the biology of this part here
 
<!-- Add more about the biology of this part here

Latest revision as of 22:44, 29 October 2016


Part expressing the dimerization protein FKBP and GFP10 (subunit of tripartite GFP)

This part is the complementary part of Bba_K2039001.

The FRB/FKBP12 system is an inducible dimerization system. Originally found in mammals, these two proteins form an heterodimer when rapamycin is added in the medium. It is particularly useful for protein interaction studies. The FRB sequence has been modified in order to dimerize with a non toxic rapamycin analog (rapalog). The mutations introduced are : T2098L, K2095P, W2101F. It has also been codon optimized with Jcat plateforme to be expressed in bacteria.

FKBP protein is linked to GFP 10.

The tripartite split-GFP is composed of two times of 20 amino-acids long GFP tags (GFP 10 and GFP 11) and a third complementary subsection (GFP 1-9).

Characterization

Test of the dimerization system with a tripartite GFP

We transformed E.coli with pSB1C3 coding for FKBP-GFP10 and FRB-GFP11 and pUC19 coding for the third part of GFP as we could not clone GFP1.9 in pSB1C3. Transformed cells where then incubated with the dimerization agent, rapalog. We try several concentration of rapalog but we did not see any GFP fluorescence with flow cytometer.

T--Paris Saclay--Testbiobrick1.png
Figure 5: : No GFP florescence is observe with rapalog All the rapalog concentrations tested (5nM, 50nM, 500nM) display a signal inferior compared to the negative control.

We did not obtain the fluorescent signal that we expected with the dimerization agent. We thought that maybe the rapalog does not penetrate into the cell. We made a second test with cell lysate in order to address this issue. Results are displayed on the plot below, each measurement was made in triplicate. We observe a slight difference between the mean fluorescence of the control (72,33 +/- 6,29) and the mean fluorescence with 150nM rapalog (85,33 +/- 2,36).

Paris-Saclay-Characterization.png

We observed a weak difference between the control and the induced samples. This difference may be more important if we consider a possible degradation of GFP parts during the lysate preparation. This experiment should be repeated for a more complete characterization.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 7
    Illegal NheI site found at 30
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 546
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 157
    Illegal AgeI site found at 331
  • 1000
    COMPATIBLE WITH RFC[1000]