Difference between revisions of "Part:BBa K1983008:Design"

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Original suffix: TACTAGTAGCGGCCGCTGCAG
 
Original suffix: TACTAGTAGCGGCCGCTGCAG
 
Part suffix: AACTAGTAGCGGCCGCTGCAG
 
Part suffix: AACTAGTAGCGGCCGCTGCAG
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 +
===Csm4 mutation list===
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 +
L72F; L236F; L99F; Y143F; L115F; L219F; L225F; L191F; L46F; Y258F; I76F; Y114F; Y175F; L235F; L293F; L25F; L204F; Y234F; L178F; L106F; L142F; L20F; L38F; I7F; Y78F; I193F; Y3F
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===Primers===
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Primers used for amplification of the fragment: <br>
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Uni-FW: GTAGAATTCGCGGCCGCTTCTAG <br>
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Uni-RV: GTAGACTGCAGCGGCCGCTACTAG <br>
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Primers used for colony PCR screening: <br>
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For pETDuet-1: <br>
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Up-A1: GGATCTCGACGCTCTCCCT <br>
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Down3: ACCCCTCAAGACCCGTTTAG <br>
  
 
===Source===
 
===Source===
  
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BBa_K1983008
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This part is derived from Streptococcus thermophilus Csm4 protein and was synthesized by Integrate DNA Technologies.
  
 
===References===
 
===References===

Latest revision as of 14:54, 22 October 2016


Streptococcus thermofilus Csm4 phenylalanine mutant M27 with C-terminal 6XHis-Tag


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 796
    Illegal XhoI site found at 907
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

Designed including Esp3I restriction site before the start codon (ATG) for efficient cloning into expression vectors, XhoI site for cutting between the protein and 6XHis-Tag.

Note: Due to technical issues, the part's suffix in the backbone is changed by one FIRST letter (T to A). However, it does not remove or add any other restriction sites and does not change the function of the suffix. The purpose of this note is to alert false negative results during sequencing if the part is used in the future.

Original suffix: TACTAGTAGCGGCCGCTGCAG Part suffix: AACTAGTAGCGGCCGCTGCAG

Csm4 mutation list

L72F; L236F; L99F; Y143F; L115F; L219F; L225F; L191F; L46F; Y258F; I76F; Y114F; Y175F; L235F; L293F; L25F; L204F; Y234F; L178F; L106F; L142F; L20F; L38F; I7F; Y78F; I193F; Y3F

Primers

Primers used for amplification of the fragment:
Uni-FW: GTAGAATTCGCGGCCGCTTCTAG
Uni-RV: GTAGACTGCAGCGGCCGCTACTAG

Primers used for colony PCR screening:

For pETDuet-1:
Up-A1: GGATCTCGACGCTCTCCCT
Down3: ACCCCTCAAGACCCGTTTAG

Source

This part is derived from Streptococcus thermophilus Csm4 protein and was synthesized by Integrate DNA Technologies.

References