Difference between revisions of "Part:BBa K2172010"

 
(7 intermediate revisions by the same user not shown)
Line 31: Line 31:
 
Tac Promoter (29bp) ---RBS (14bp) ---GST (757) ---Thrombin protease (18bp) ---SmCPS1 (2382bp) ---TEV (21bp) ---GFP (720bp) ---Terminator (160bp)
 
Tac Promoter (29bp) ---RBS (14bp) ---GST (757) ---Thrombin protease (18bp) ---SmCPS1 (2382bp) ---TEV (21bp) ---GFP (720bp) ---Terminator (160bp)
  
We constructed this complete circuit finally to express our gene SmCPS1 and secrete its protein from E. coli. The whole gene circuit consists of K2172010 part including SmCPS1. Thus we labeled GFP segment to test functions. As pure protein SmCPS1 have successfully been extracted, we are able to synthesize one process of the compounds production.
+
We constructed this complete circuit in pGEX-KG vector finally to express our gene SmCPS1 and secrete its protein from E. coli BL21. The whole gene circuit consists of K2172010 part with SmCPS1. Thus we labeled GFP segment to test functions.  As pure protein SmCPS1 have successfully been extracted, we are able to synthesize one process of the compounds production.
 +
 
  
 
[[File:T--CIEI-BJ--colony1.jpg|600px|thumb|center]]
 
[[File:T--CIEI-BJ--colony1.jpg|600px|thumb|center]]
 +
 +
Then we used the optimal condition to produce our target recombinant proteins. During the enrichment of the bacterial process, we checked the GFP fluorescence of the bacterial. And the result showed that the GFP fluorescence was observaed. It indicated that our SmCPS1-GFP recombinant protein has been expressed in the bacteria.
 +
 +
[[File:T--CIEI-BJ--tu14.png|600px|thumb|center|Fig. The GFP fluorescence of the bacterial precipitation]]
 +
 +
After ultrasonication, we used the SDS-PAGE electrophoresis to detect our target protein, and the result showed that we succesfully produced our the recombinant protein.
 +
 +
[[File:T--CIEI-BJ--Pic001.png|600px|thumb|center|Fig. The SDS-PAGE electrophoresis of recombinant protein]]
 +
 +
Lane 1, total protein without IPTG induction; Lane 2, supernatant without IPTG induction; Lane 3, total protein with IPTG induction; Lane 4, supernatant with IPTG induction. Black arrow shows the targeted recombinant proteins.
 +
 +
In order to verify the successful expression of SmCPS1 with our device, we performed sonication on E. coli cells and smashed them. Then the supernatant fluid and total protein were collected for the SDS protein electrophoresis. The results of the SDS-PAGE showed that with induction of IPTG, the protein SmCPS1 can be successfully expressed by our device, with size of 136 KD, which is in accordance with our expectation.
 +
 +
Next we committed Western Blot method to detect the exitence of GST tag by using GST antibody. The results showed that, under both situations, bacteria successfully expressed our recombinant protein. It also showed that, the concentration of soluble SmCPS1 produced by the IPTG-induced bacteria is much greater than that of the protein produced by the non-IPTG-induced one.
 +
 +
[[File:T--CIEI-BJ--Pic002.png|600px|thumb|center|Fig. Western blot result using GST antibody. Lane a, total protein without IPTG induction; Lane b, total protein with IPTG induction; Lane c, supernatant without IPTG induction; Lane d, supernatant with IPTG induction.]]
 +
 +
  
 
'''Tac Promoter (29bp): '''
 
'''Tac Promoter (29bp): '''
Line 40: Line 59:
  
 
'''Sequence: '''tgacaattaatcatcggctcgtataatgt
 
'''Sequence: '''tgacaattaatcatcggctcgtataatgt
 +
  
  
Line 49: Line 69:
  
 
tcacacaggaaaca
 
tcacacaggaaaca
 +
  
  
Line 68: Line 89:
  
 
cttattcatcgtgactgac
 
cttattcatcgtgactgac
 +
  
 
'''Thrombin protease (18bp): '''
 
'''Thrombin protease (18bp): '''
  
 
'''Sequence:''' CTGGTTCCGCGTGGATCC
 
'''Sequence:''' CTGGTTCCGCGTGGATCC
 +
  
 
'''TEV (21bp):'''
 
'''TEV (21bp):'''
Line 78: Line 101:
  
 
'''Sequence:''' GAAAACCTGTATTTTCAGGGC
 
'''Sequence:''' GAAAACCTGTATTTTCAGGGC
 +
  
  
Line 83: Line 107:
  
 
'''Function: '''The gene for the production of GFP is incorporated into the genome of the organism in the region of the DNA that codes for the target proteins and that is controlled by the same regulatory sequence; that is, the gene's regulatory sequence now controls the production of GFP, where expression of GFP can be used as a detection device for a particular characteristic.
 
'''Function: '''The gene for the production of GFP is incorporated into the genome of the organism in the region of the DNA that codes for the target proteins and that is controlled by the same regulatory sequence; that is, the gene's regulatory sequence now controls the production of GFP, where expression of GFP can be used as a detection device for a particular characteristic.
 +
 
'''Sequence: '''
 
'''Sequence: '''
ATGGTGAGCAAGGGCGAGGAGCTGTTCACCGGGGTGGTGCCCATCCTGGTCGAGCTGGACGGCGACGTAAACGGCCACAAGTTCAGCGTGTCCGGCGAGGGCGAGGGCGATGCCACCTACGGCAAGCTGACCCTGAAGTTCATCTGCACCACCGGCAAGCTGCCCGTGCCCTGGCCCACCCTCGTGACCACCCTGACCTACGGCGTGCAGTGCTTCAGCCGCTACCCCGACCACATGAAGCAGCACGACTTCTTCAAGTCCGCCATGCCCGAAGGCTACGTCCAGGAGCGCACCATCTTCTTCAAGGACGACGGCAACTACAAGACCCGCGCCGAGGTGAAGTTCGAGGGCGACACCCTGGTGAACCGCATCGAGCTGAAGGGCATCGACTTCAAGGAGGACGGCAACATCCTGGGGCACAAGCTGGAGTACAACTACAACAGCCACAACGTCTATATCATGGCCGACAAGCAGAAGAACGGCATCAAGGTGAACTTCAAGATCCGCCACAACATCGAGGACGGCAGCGTGCAGCTCGCCGACCACTACCAGCAGAACACCCCCATCGGCGACGGCCCCGTGCTGCTGCCCGACAACCACTACCTGAGCACCCAGTCCGCCCTGAGCAAAGACCCCAACGAGAAGCGCGATCACATGGTCCTGCTGGAGTTCGTGACCGCCGCCGGGATCACTCTCGGCATGGACGAGCTGTACAAGTAA
+
 
 +
ATGGTGAGCAAGGGCGAGGAGCTGTTCACCGGGGTGGTGCCCATCCTGGTCGAGCTGGACGGCGACGTAAACGGCCACAAGTTCAGCGTGTCC
 +
 
 +
GGCGAGGGCGAGGGCGATGCCACCTACGGCAAGCTGACCCTGAAGTTCATCTGCACCACCGGCAAGCTGCCCGTGCCCTGGCCCACCCTCGTG
 +
 
 +
ACCACCCTGACCTACGGCGTGCAGTGCTTCAGCCGCTACCCCGACCACATGAAGCAGCACGACTTCTTCAAGTCCGCCATGCCCGAAGGCTACG
 +
 
 +
TCCAGGAGCGCACCATCTTCTTCAAGGACGACGGCAACTACAAGACCCGCGCCGAGGTGAAGTTCGAGGGCGACACCCTGGTGAACCGCATCGA
 +
 
 +
GCTGAAGGGCATCGACTTCAAGGAGGACGGCAACATCCTGGGGCACAAGCTGGAGTACAACTACAACAGCCACAACGTCTATATCATGGCCGACA
 +
 
 +
AGCAGAAGAACGGCATCAAGGTGAACTTCAAGATCCGCCACAACATCGAGGACGGCAGCGTGCAGCTCGCCGACCACTACCAGCAGAACACCCC
 +
 
 +
CATCGGCGACGGCCCCGTGCTGCTGCCCGACAACCACTACCTGAGCACCCAGTCCGCCCTGAGCAAAGACCCCAACGAGAAGCGCGATCACATG
 +
 
 +
GTCCTGCTGGAGTTCGTGACCGCCGCCGGGATCACTCTCGGCATGGACGAGCTGTACAAGTAA
 +
 
 +
 
  
 
'''Terminator (160bp): '''
 
'''Terminator (160bp): '''
 +
 
'''Function:''' Termination (T terminator) is the DNA sequence of the RNA polymerase termination signal of transcription, which is a structure at A structure in the poly (A) site downstream around 160bp
 
'''Function:''' Termination (T terminator) is the DNA sequence of the RNA polymerase termination signal of transcription, which is a structure at A structure in the poly (A) site downstream around 160bp
 +
 
'''Sequence: '''
 
'''Sequence: '''
AGCGATAGCGGAGTGTATAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATACATT
+
 
 +
AGCGATAGCGGAGTGTATAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAG
 +
 
 +
GTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATACATT
 +
 
  
  
 
'''SmCPS1 sequencing result (before Site-directed mutagenesis):'''
 
'''SmCPS1 sequencing result (before Site-directed mutagenesis):'''
ATGGCCTCCTTATCCTCTACAATCCTCAGCCGCTCTCCGGCGGCCCGCCGCAGAATTACGCCGGCATCGGCTAAGCTTCACCTGCCGGAATGTTTCGCCATCAGTGCATGGATGGGCAGCAGCACTAAAAACCTTTCTCTCAGCTACCAACTTAATCACAAGAAAATATCAGTTGCCACAGTAGATGCGCCGCAGGTGCATGACCACGACGGCACTACCGTTCATCAAGGCCATGATGCGGTGAAGAATATTGAGGATCCCATTGAATACATCAGGACGTTGTTGAGGACGACGGGGGACGGGAGAATAAGCGTGTCGCCGTACGACACGGCGTGGGTGGCGATGATCAAGGACGTGGAGGGGCGGGACGGGCCCCAGTTCCCCTCCAGCCTCGAGTGGATCGTGCAGAATCAACTCGAGGATGGATCGTGGGGCGATCAGAAGCTTTTCTGCGTCTACGATCGCCTCGTCAATACCATCGCGTGCGTGGTAGCCTTGAGATCGTGGAATGTTCATGCTCACAAGGTCAAAAGAGGAGTGACGTACATCAAGGAAAATGTGGATAAACTTATGGAGGGAAATGAGGAGCACATGACTTGTGGGTTCGAAGTGGTGTTTCCGGCGCTTCTACAAAAAGCGAAAAGCTTAGGCATCGAAGATCTTCCTTACGATTCTCCGGCGGTGCAGGAGGTTTATCATGTCAGGGAACAAAAGTTGAAAAGGATTCCACTGGAGATTATGCACAAAATACCGACATCATTATTATTTAGTTTGGAAGGGCTCGAAAATTTGGATTGGGACAAACTTTTGAAACTGCAGTCAGCCGACGGTTCCTTCCTCACCTCTCCCTCCTCCACCGCCTTCGCGTTCATGCAAACCAAGGATGAAAAATGCTACCAATTCATCAAGAACACGATAGACACTTTCAACGGAGGAGCGCCACACACTTATCCCGTCGACGTGTTTGGAAGGCTCTGGGCGATCGACCGGCTGCAGCGCCTCGGAATTTCCCGCTTTTTTGAGCCGGAGATTGCTGATTGCTTAAGCCACATCCACAAATTTTGGACGGATAAGGGAGTTTTCAGTGGG
+
ATGGCCTCCTTATCCTCTACAATCCTCAGCCGCTCTCCGGCGGCCCGCCGCAGAATTACGCCGGCATCGGCTAAGCTTCACCTGCCGGAATGTTTC
 +
 
 +
GCCATCAGTGCATGGATGGGCAGCAGCACTAAAAACCTTTCTCTCAGCTACCAACTTAATCACAAGAAAATATCAGTTGCCACAGTAGATGCGCCGC
 +
 
 +
AGGTGCATGACCACGACGGCACTACCGTTCATCAAGGCCATGATGCGGTGAAGAATATTGAGGATCCCATTGAATACATCAGGACGTTGTTGAGGAC
 +
 
 +
GACGGGGGACGGGAGAATAAGCGTGTCGCCGTACGACACGGCGTGGGTGGCGATGATCAAGGACGTGGAGGGGCGGGACGGGCCCCAGTTCCC
 +
 
 +
CTCCAGCCTCGAGTGGATCGTGCAGAATCAACTCGAGGATGGATCGTGGGGCGATCAGAAGCTTTTCTGCGTCTACGATCGCCTCGTCAATACCATC
 +
 
 +
GCGTGCGTGGTAGCCTTGAGATCGTGGAATGTTCATGCTCACAAGGTCAAAAGAGGAGTGACGTACATCAAGGAAAATGTGGATAAACTTATGGAGG
 +
 
 +
GAAATGAGGAGCACATGACTTGTGGGTTCGAAGTGGTGTTTCCGGCGCTTCTACAAAAAGCGAAAAGCTTAGGCATCGAAGATCTTCCTTACGATTC
 +
 
 +
TCCGGCGGTGCAGGAGGTTTATCATGTCAGGGAACAAAAGTTGAAAAGGATTCCACTGGAGATTATGCACAAAATACCGACATCATTATTATTTAGTTT
 +
 
 +
GGAAGGGCTCGAAAATTTGGATTGGGACAAACTTTTGAAACTGCAGTCAGCCGACGGTTCCTTCCTCACCTCTCCCTCCTCCACCGCCTTCGCGTTC
 +
 
 +
ATGCAAACCAAGGATGAAAAATGCTACCAATTCATCAAGAACACGATAGACACTTTCAACGGAGGAGCGCCACACACTTATCCCGTCGACGTGTTTGGA
 +
 
 +
AGGCTCTGGGCGATCGACCGGCTGCAGCGCCTCGGAATTTCCCGCTTTTTTGAGCCGGAGATTGCTGATTGCTTAAGCCACATCCACAAATTTTGGAC
 +
 
 +
GGATAAGGGAGTTTTCAGTGGGAGAGAATCGGAGTTTTGCGACATTGACGATACATCCATGGGAATGAGGCTTATGAGGATGCATGGATATGATGTTGAT
 +
 
 +
CCAAATGTGCTGAGGAATTTCAAGCAGAAAGATGGTAAATTCTCTTGCTACGGCGGGCAGATGATCGAGTCGCCTTCTCCGATATACAATCTTTACAGAG
 +
 
 +
CTTCTCAGCTCCGATTTCCCGGCGAGGAAATCCTCGAAGATGCGAAGAAATTCGCCTACGATTTCTTGAAAGAAAAACTAGCCAACAATCAGATTCTGGA
 +
 
 +
TAAATGGGTTATTTCTAAGCACTTGCCTGATGAGATCAAGCTCGGGCTAGAGATGCCGTGGCTCGCCACCCTACCCCGCGTCGAGGCGAAGTACTACATC
 +
 
 +
CAGTACTACGCCGGCTCCGGCGACGTGTGGATCGGGAAGACGCTGTACAGGATGCCGGAGATCAGCAACGACACGTACCACGACCTAGCCAAGACGGAT
 +
 
 +
TTCAAGAGATGCCAAGCGAAGCATCAGTTCGAGTGGCTCTACATGCAAGAATGGTACGAGAGCTGCGGCATCGAGGAATTCGGGATAAGCAGAAAGGACC
 +
 
 +
TTCTGCTTTCCTATTTCTTGGCGACCGCGAGCATCTTCGAGCTCGAGAGGACCAACGAGCGAATCGCGTGGGCCAAATCGCAGATCATCGCTAAGATGAT
 +
 
 +
CACTTCTTTCTTCAACAAGGAAACTACGTCGGAGGAGGACAAGCGAGCTCTTTTGAACGAGCTCGGAAACATTAATGGCCTCAACGACACAAACGGCGCA
 +
 
 +
GGGAGAGAAGGTGGGGCCGGTAGCATTGCGCTAGCGACCCTCACTCAGTTCCTCGAGGGATTCGACAGATACACCAGACACCAGCTGAAAAATGCTTGGA
 +
 
 +
GCGTATGGCTGACGCAGCTGCAACATGGCGAAGCAGACGACGCAGAGCTCCTAACCAACACGTTGAACATCTGCGCCGGCCACATCGCCTTCAGGGAAGA
 +
 
 +
AATACTGGCGCACAACGAGTACAAAACTCTCTCCAACCTAACCAGCAAAATCTGTCGGCAACTTTCTTTCATTCAAAGCGAAAAGGAGATGGGAGTAGAGGG
 +
 
 +
CGAGATCGCAGCGAAATCGAGCATAAAAAACAAGGAACTCGAAGAAGACATGCAAATGTTGGTGAAGTTGGTGCTTGAGAAATATGGGGGCATAGATAGAAA
 +
 
 +
TATAAAGAAAGCGTTTTTGGCAGTTGCGAAGACTTATTATTACAGAGCGTATCATGCCGCCGACACCATAGACACACACATGTTTAAAGTGCTTTTCGAGCCAG
 +
 
 +
TCGCGTGA
 +
 
 +
 
 +
'''After Site-directed mutagenesis:'''
 +
 
 +
ATGGCCTCCTTATCCTCTACAATCCTCAGCCGCTCTCCGGCGGCCCGCCGCAGAATTACGCCGGCATCGGCTAAGCTTCACCTGCCGGAATGT
 +
 
 +
TTCGCCATCAGTGCATGGATGGGCAGCAGCACTAAAAACCTTTCTCTCAGCTACCAACTTAATCACAAGAAAATATCAGTTGCCACAGTAGATGC
 +
 
 +
GCCGCAGGTGCATGACCACGACGGCACTACCGTTCATCAAGGCCATGATGCGGTGAAGAATATTGAGGATCCCATTGAATACATCAGGACGTTG
 +
 
 +
TTGAGGACGACGGGGGACGGGAGAATAAGCGTGTCGCCGTACGACACGGCGTGGGTGGCGATGATCAAGGACGTGGAGGGGCGGGACGGGC
 +
 
 +
CCCAGTTCCCCTCCAGCCTCGAGTGGATCGTGCAGAATCAACTCGAGGATGGATCGTGGGGCGATCAGAAGCTTTTCTGCGTCTACGATCGCC
 +
 
 +
TCGTCAATACCATCGCGTGCGTGGTAGCCTTGAGATCGTGGAATGTTCATGCTCACAAGGTCAAAAGAGGAGTGACGTACATCAAGGAAAATGT
 +
 
 +
GGATAAACTTATGGAGGGAAATGAGGAGCACATGACTTGTGGGTTCGAAGTGGTGTTTCCGGCGCTTCTACAAAAAGCGAAAAGCTTAGGCATC
 +
 
 +
GAAGATCTTCCTTACGATTCTCCGGCGGTGCAGGAGGTTTATCATGTCAGGGAACAAAAGTTGAAAAGGATTCCACTGGAGATTATGCACAAAA
 +
 
 +
TACCGACATCATTATTATTTAGTTTGGAAGGGCTCGAAAATTTGGATTGGGACAAACTTTTGAAACTCCAGTCAGCCGACGGTTCCTTCCTCACC
 +
 
 +
TCTCCCTCCTCCACCGCCTTCGCGTTCATGCAAACCAAGGATGAAAAATGCTACCAATTCATCAAGAACACGATAGACACTTTCAACGGAGGAG
 +
 
 +
CGCCACACACTTATCCCGTCGACGTGTTTGGAAGGCTCTGGGCGATCGACCGGCTCCAGCGCCTCGGAATTTCCCGCTTTTTTGAGCCGGAG
 +
 
 +
ATTGCTGATTGCTTAAGCCACATCCACAAATTTTGGACGGATAAGGGAGTTTTCAGTGGGAGAGAATCGGAGTTTTGCGACATTGACGATACAT
 +
 
 +
CCATGGGAATGAGGCTTATGAGGATGCATGGATATGATGTTGATCCAAATGTGCTGAGGAATTTCAAGCAGAAAGATGGTAAATTCTCTTGCTACG
 +
 
 +
GCGGGCAGATGATCGAGTCGCCTTCTCCGATATACAATCTTTACAGAGCTTCTCAGCTCCGATTTCCCGGCGAGGAAATCCTCGAAGATGCGAA
 +
 
 +
GAAATTCGCCTACGATTTCTTGAAAGAAAAACTAGCCAACAATCAGATTCTGGATAAATGGGTTATTTCTAAGCACTTGCCTGATGAGATCAAGCTC
 +
 
 +
GGGCTAGAGATGCCGTGGCTCGCCACCCTACCCCGCGTCGAGGCGAAGTACTACATCCAGTACTACGCCGGCTCCGGCGACGTGTGGATCGGG
 +
 
 +
AAGACGCTGTACAGGATGCCGGAGATCAGCAACGACACGTACCACGACCTAGCCAAGACGGATTTCAAGAGATGCCAAGCGAAGCATCAGTTCG
 +
 
 +
AGTGGCTCTACATGCAAGAATGGTACGAGAGCTGCGGCATCGAGGAGTTCGGGATAAGCAGAAAGGACCTTCTGCTTTCCTATTTCTTGGCGACC
 +
 
 +
GCGAGCATCTTCGAGCTCGAGAGGACCAACGAGCGAATCGCGTGGGCCAAATCGCAGATCATCGCTAAGATGATCACTTCTTTCTTCAACAAGGA
 +
 
 +
AACTACGTCGGAGGAGGACAAGCGAGCTCTTTTGAACGAGCTCGGAAACATTAATGGCCTCAACGACACAAACGGCGCAGGGAGAGAAGGTGGG
 +
 
 +
GCCGGTAGCATTGCGCTAGCGACCCTCACTCAGTTCCTCGAGGGATTCGACAGATACACCAGACACCAGCTGAAAAATGCTTGGAGCGTATGGC
 +
 
 +
TGACGCAGCTGCAACATGGCGAAGCAGACGACGCAGAGCTCCTAACCAACACGTTGAACATCTGCGCCGGCCACATCGCCTTCAGGGAAGAAAT
 +
 
 +
ACTGGCGCACAACGAGTACAAAACTCTCTCCAACCTAACCAGCAAAATCTGTCGGCAACTTTCTTTCATTCAAAGCGAAAAGGAGATGGGAGTAGA
 +
 
 +
GGGCGAGATCGCAGCGAAATCGAGCATAAAAAACAAGGAACTCGAAGAAGACATGCAAATGTTGGTGAAGTTGGTGCTTGAGAAATATGGGGGCA
 +
 
 +
TAGATAGAAATATAAAGAAAGCGTTTTTGGCAGTTGCGAAGACTTATTATTACAGAGCGTATCATGCCGCCGACACCATAGACACACACATGTTTAAA
 +
 
 +
GTGCTTTTCGAGCCAGTCGCGTGA
 +
 
 +
 
 +
'''Three Site-directed mutagenesis:'''
 +
[[File:T--CIEI-BJ--partLily1.jpg|600px|thumb|center]]
 +
 
 +
 
 +
 
 +
===Usage and Biology===
 +
 
 +
<!-- -->
 +
<span class='h3bb'>Sequence and Features</span>
 +
<partinfo>BBa_K2172010 SequenceAndFeatures</partinfo>
 +
 
 +
 
 +
<!-- Uncomment this to enable Functional Parameter display
 +
===Functional Parameters===
 +
<partinfo>BBa_K2172010 parameters</partinfo>
 +
<!-- -->

Latest revision as of 03:02, 20 October 2016


Tac Promoter-RBS-GST-Thrombin Protease-TEV-GFP-Terminator

This part is a gene circuit that can be used to test whether it is being expressed or not. It comprises of a ribosome binding site (RBS) for ribosomes to bind, a GST label for purification, a thrombin protease cleavage site plus a TEV protease cleavage site, a GFP detection unit, and a terminator. When transformed into bacteria, e.g. E. coli, it can be used to test whether the bacteria are expressing the part not. Other parts, such as the gene SmCPS1, can be inserted into this part via digestion on the thrombin site and the TEV site.

T--CIEI-BJ--yinjiangpart10.jpg

This circuit is responsible for the function of all sequence with a terminator waiting for the SmCPS1 protein to insert among Thrombin protease and TEV restriction cleavage sites. The above circuit without target gene SmCPS1 is constructed mainly to test whether it produces SmCPS1. If the circuit do work, it would result in the expression of the GFP gene and emission of green fluorescent light.


Name: BBa_K2172010

TAC-F primer: TCTAGATGACAATTAATCATCGGCT

TE-R primer: ACTAGTATGTATTTAGAAAAATAAACAAATAGG

Description: Promoter and RBS added, GST labeled, coding with Thrombin and TEV restriction enzyme cleavage sites, GFP detector, and Terminator.

Function: See BBa_K2172010 in part registry.

Length: 1719bp

We separated target gene SmCPS1 from the whole circuit adding GFP detector and terminator as terminal signal to test its function, which ensure the further protein secretion.

T--CIEI-BJ--fluorescence1b.jpg
T--CIEI-BJ--fluorescence1a.jpg

Green fluorescent light of E. coli under microscope. The E. coli transformed from white to fluorescent Green, because GFP segment inserted into plasmid result in unique detective color. We obtained the average expressive value of the green fluorescence in the biobrick part.

T--CIEI-BJ--yinjiangpart06.jpg

Tac Promoter (29bp) ---RBS (14bp) ---GST (757) ---Thrombin protease (18bp) ---SmCPS1 (2382bp) ---TEV (21bp) ---GFP (720bp) ---Terminator (160bp)

We constructed this complete circuit in pGEX-KG vector finally to express our gene SmCPS1 and secrete its protein from E. coli BL21. The whole gene circuit consists of K2172010 part with SmCPS1. Thus we labeled GFP segment to test functions.  As pure protein SmCPS1 have successfully been extracted, we are able to synthesize one process of the compounds production.


T--CIEI-BJ--colony1.jpg

Then we used the optimal condition to produce our target recombinant proteins. During the enrichment of the bacterial process, we checked the GFP fluorescence of the bacterial. And the result showed that the GFP fluorescence was observaed. It indicated that our SmCPS1-GFP recombinant protein has been expressed in the bacteria.

File:T--CIEI-BJ--tu14.png
Fig. The GFP fluorescence of the bacterial precipitation

After ultrasonication, we used the SDS-PAGE electrophoresis to detect our target protein, and the result showed that we succesfully produced our the recombinant protein.

File:T--CIEI-BJ--Pic001.png
Fig. The SDS-PAGE electrophoresis of recombinant protein

Lane 1, total protein without IPTG induction; Lane 2, supernatant without IPTG induction; Lane 3, total protein with IPTG induction; Lane 4, supernatant with IPTG induction. Black arrow shows the targeted recombinant proteins.

In order to verify the successful expression of SmCPS1 with our device, we performed sonication on E. coli cells and smashed them. Then the supernatant fluid and total protein were collected for the SDS protein electrophoresis. The results of the SDS-PAGE showed that with induction of IPTG, the protein SmCPS1 can be successfully expressed by our device, with size of 136 KD, which is in accordance with our expectation.

Next we committed Western Blot method to detect the exitence of GST tag by using GST antibody. The results showed that, under both situations, bacteria successfully expressed our recombinant protein. It also showed that, the concentration of soluble SmCPS1 produced by the IPTG-induced bacteria is much greater than that of the protein produced by the non-IPTG-induced one.

File:T--CIEI-BJ--Pic002.png
Fig. Western blot result using GST antibody. Lane a, total protein without IPTG induction; Lane b, total protein with IPTG induction; Lane c, supernatant without IPTG induction; Lane d, supernatant with IPTG induction.


Tac Promoter (29bp):

Function: The tac promoter, a strong hybrid promoter, is used to control and increase the expression levels of a target gene and is used in the over-expression of recombinant proteins, produced from the combination of promoters from the trp and lac operons.

Sequence: tgacaattaatcatcggctcgtataatgt


RBS (14bp):

Function: A ribosome binding site (RBS) is a sequence of mRNA. It is used to lead the ribosome to the right position on the mRNA during the beginning of translation

Sequence:

tcacacaggaaaca


GST (757bp):

Function: By inserting the GST DNA coding sequence next to protein of interest, the GST can be added to a protein of interest to purify the fusion protein from solution in a process known as a pull-down assay. The strong binding affinity of GFP beads coated with the compound can be added to the protein mixture. As a result, the protein of interest attached to the GST will stick to the beads, isolating the protein from the rest of those in solution.

Sequence:

atgtcccctatactaggttattggaaaattaagggccttgtgcaacccactcgacttcttttggaatatcttgaagaaaaatatgaagagcatttgtatgagcgcgatgaaggtgataaatggcgaaacaaaaagtttgaattggg

tttggagtttcccaatcttccttattatattgatggtgatgttaaattaacacagtctatggccatcatacgttatatagctgacaagcacaacatgttgggtggttgtccaaaagagcgtgcagagatttcaatgcttgaaggagcg

gttttggatattagatacggtgtttcgagaattgcatatagtaaagactttgaaactctcaaagttgattttcttagcaagctacctgaaatgctgaaaatgttcgaagatcgtttatgtcataaaacatatttaaatggtgatcatgtaa

cccatcctgacttcatgttgtatgacgctcttgatgttgttttatacatggacccaatgtgcctggatgcgttcccaaaattagtttgttttaaaaaacgtattgaagctatcccacaaattgataagtacttgaaatccagcaagtata

tagcatggcctttgcagggctggcaagccacgtttggtggtggcgaccatcctccaaaatcggatctggttccgcgtggatccccgggaatttccggtggtggtggtggaattctagactccatgggtcgactcgagctcaag

cttattcatcgtgactgac


Thrombin protease (18bp):

Sequence: CTGGTTCCGCGTGGATCC


TEV (21bp):

Function: Thrombin protease, a DNA segment of pGEX-KG vector containing Bam Hl cloning site after GST, and TEV added at front of the GFP, are the two type of restriction enzyme cleavage sites inserted into tanshinone gene circuit in order to purify the SmCPS1 enzyme.

Sequence: GAAAACCTGTATTTTCAGGGC


GFP (720bp):

Function: The gene for the production of GFP is incorporated into the genome of the organism in the region of the DNA that codes for the target proteins and that is controlled by the same regulatory sequence; that is, the gene's regulatory sequence now controls the production of GFP, where expression of GFP can be used as a detection device for a particular characteristic.

Sequence:

ATGGTGAGCAAGGGCGAGGAGCTGTTCACCGGGGTGGTGCCCATCCTGGTCGAGCTGGACGGCGACGTAAACGGCCACAAGTTCAGCGTGTCC

GGCGAGGGCGAGGGCGATGCCACCTACGGCAAGCTGACCCTGAAGTTCATCTGCACCACCGGCAAGCTGCCCGTGCCCTGGCCCACCCTCGTG

ACCACCCTGACCTACGGCGTGCAGTGCTTCAGCCGCTACCCCGACCACATGAAGCAGCACGACTTCTTCAAGTCCGCCATGCCCGAAGGCTACG

TCCAGGAGCGCACCATCTTCTTCAAGGACGACGGCAACTACAAGACCCGCGCCGAGGTGAAGTTCGAGGGCGACACCCTGGTGAACCGCATCGA

GCTGAAGGGCATCGACTTCAAGGAGGACGGCAACATCCTGGGGCACAAGCTGGAGTACAACTACAACAGCCACAACGTCTATATCATGGCCGACA

AGCAGAAGAACGGCATCAAGGTGAACTTCAAGATCCGCCACAACATCGAGGACGGCAGCGTGCAGCTCGCCGACCACTACCAGCAGAACACCCC

CATCGGCGACGGCCCCGTGCTGCTGCCCGACAACCACTACCTGAGCACCCAGTCCGCCCTGAGCAAAGACCCCAACGAGAAGCGCGATCACATG

GTCCTGCTGGAGTTCGTGACCGCCGCCGGGATCACTCTCGGCATGGACGAGCTGTACAAGTAA


Terminator (160bp):

Function: Termination (T terminator) is the DNA sequence of the RNA polymerase termination signal of transcription, which is a structure at A structure in the poly (A) site downstream around 160bp

Sequence:

AGCGATAGCGGAGTGTATAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAG

GTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATACATT


SmCPS1 sequencing result (before Site-directed mutagenesis): ATGGCCTCCTTATCCTCTACAATCCTCAGCCGCTCTCCGGCGGCCCGCCGCAGAATTACGCCGGCATCGGCTAAGCTTCACCTGCCGGAATGTTTC

GCCATCAGTGCATGGATGGGCAGCAGCACTAAAAACCTTTCTCTCAGCTACCAACTTAATCACAAGAAAATATCAGTTGCCACAGTAGATGCGCCGC

AGGTGCATGACCACGACGGCACTACCGTTCATCAAGGCCATGATGCGGTGAAGAATATTGAGGATCCCATTGAATACATCAGGACGTTGTTGAGGAC

GACGGGGGACGGGAGAATAAGCGTGTCGCCGTACGACACGGCGTGGGTGGCGATGATCAAGGACGTGGAGGGGCGGGACGGGCCCCAGTTCCC

CTCCAGCCTCGAGTGGATCGTGCAGAATCAACTCGAGGATGGATCGTGGGGCGATCAGAAGCTTTTCTGCGTCTACGATCGCCTCGTCAATACCATC

GCGTGCGTGGTAGCCTTGAGATCGTGGAATGTTCATGCTCACAAGGTCAAAAGAGGAGTGACGTACATCAAGGAAAATGTGGATAAACTTATGGAGG

GAAATGAGGAGCACATGACTTGTGGGTTCGAAGTGGTGTTTCCGGCGCTTCTACAAAAAGCGAAAAGCTTAGGCATCGAAGATCTTCCTTACGATTC

TCCGGCGGTGCAGGAGGTTTATCATGTCAGGGAACAAAAGTTGAAAAGGATTCCACTGGAGATTATGCACAAAATACCGACATCATTATTATTTAGTTT

GGAAGGGCTCGAAAATTTGGATTGGGACAAACTTTTGAAACTGCAGTCAGCCGACGGTTCCTTCCTCACCTCTCCCTCCTCCACCGCCTTCGCGTTC

ATGCAAACCAAGGATGAAAAATGCTACCAATTCATCAAGAACACGATAGACACTTTCAACGGAGGAGCGCCACACACTTATCCCGTCGACGTGTTTGGA

AGGCTCTGGGCGATCGACCGGCTGCAGCGCCTCGGAATTTCCCGCTTTTTTGAGCCGGAGATTGCTGATTGCTTAAGCCACATCCACAAATTTTGGAC

GGATAAGGGAGTTTTCAGTGGGAGAGAATCGGAGTTTTGCGACATTGACGATACATCCATGGGAATGAGGCTTATGAGGATGCATGGATATGATGTTGAT

CCAAATGTGCTGAGGAATTTCAAGCAGAAAGATGGTAAATTCTCTTGCTACGGCGGGCAGATGATCGAGTCGCCTTCTCCGATATACAATCTTTACAGAG

CTTCTCAGCTCCGATTTCCCGGCGAGGAAATCCTCGAAGATGCGAAGAAATTCGCCTACGATTTCTTGAAAGAAAAACTAGCCAACAATCAGATTCTGGA

TAAATGGGTTATTTCTAAGCACTTGCCTGATGAGATCAAGCTCGGGCTAGAGATGCCGTGGCTCGCCACCCTACCCCGCGTCGAGGCGAAGTACTACATC

CAGTACTACGCCGGCTCCGGCGACGTGTGGATCGGGAAGACGCTGTACAGGATGCCGGAGATCAGCAACGACACGTACCACGACCTAGCCAAGACGGAT

TTCAAGAGATGCCAAGCGAAGCATCAGTTCGAGTGGCTCTACATGCAAGAATGGTACGAGAGCTGCGGCATCGAGGAATTCGGGATAAGCAGAAAGGACC

TTCTGCTTTCCTATTTCTTGGCGACCGCGAGCATCTTCGAGCTCGAGAGGACCAACGAGCGAATCGCGTGGGCCAAATCGCAGATCATCGCTAAGATGAT

CACTTCTTTCTTCAACAAGGAAACTACGTCGGAGGAGGACAAGCGAGCTCTTTTGAACGAGCTCGGAAACATTAATGGCCTCAACGACACAAACGGCGCA

GGGAGAGAAGGTGGGGCCGGTAGCATTGCGCTAGCGACCCTCACTCAGTTCCTCGAGGGATTCGACAGATACACCAGACACCAGCTGAAAAATGCTTGGA

GCGTATGGCTGACGCAGCTGCAACATGGCGAAGCAGACGACGCAGAGCTCCTAACCAACACGTTGAACATCTGCGCCGGCCACATCGCCTTCAGGGAAGA

AATACTGGCGCACAACGAGTACAAAACTCTCTCCAACCTAACCAGCAAAATCTGTCGGCAACTTTCTTTCATTCAAAGCGAAAAGGAGATGGGAGTAGAGGG

CGAGATCGCAGCGAAATCGAGCATAAAAAACAAGGAACTCGAAGAAGACATGCAAATGTTGGTGAAGTTGGTGCTTGAGAAATATGGGGGCATAGATAGAAA

TATAAAGAAAGCGTTTTTGGCAGTTGCGAAGACTTATTATTACAGAGCGTATCATGCCGCCGACACCATAGACACACACATGTTTAAAGTGCTTTTCGAGCCAG

TCGCGTGA


After Site-directed mutagenesis:

ATGGCCTCCTTATCCTCTACAATCCTCAGCCGCTCTCCGGCGGCCCGCCGCAGAATTACGCCGGCATCGGCTAAGCTTCACCTGCCGGAATGT

TTCGCCATCAGTGCATGGATGGGCAGCAGCACTAAAAACCTTTCTCTCAGCTACCAACTTAATCACAAGAAAATATCAGTTGCCACAGTAGATGC

GCCGCAGGTGCATGACCACGACGGCACTACCGTTCATCAAGGCCATGATGCGGTGAAGAATATTGAGGATCCCATTGAATACATCAGGACGTTG

TTGAGGACGACGGGGGACGGGAGAATAAGCGTGTCGCCGTACGACACGGCGTGGGTGGCGATGATCAAGGACGTGGAGGGGCGGGACGGGC

CCCAGTTCCCCTCCAGCCTCGAGTGGATCGTGCAGAATCAACTCGAGGATGGATCGTGGGGCGATCAGAAGCTTTTCTGCGTCTACGATCGCC

TCGTCAATACCATCGCGTGCGTGGTAGCCTTGAGATCGTGGAATGTTCATGCTCACAAGGTCAAAAGAGGAGTGACGTACATCAAGGAAAATGT

GGATAAACTTATGGAGGGAAATGAGGAGCACATGACTTGTGGGTTCGAAGTGGTGTTTCCGGCGCTTCTACAAAAAGCGAAAAGCTTAGGCATC

GAAGATCTTCCTTACGATTCTCCGGCGGTGCAGGAGGTTTATCATGTCAGGGAACAAAAGTTGAAAAGGATTCCACTGGAGATTATGCACAAAA

TACCGACATCATTATTATTTAGTTTGGAAGGGCTCGAAAATTTGGATTGGGACAAACTTTTGAAACTCCAGTCAGCCGACGGTTCCTTCCTCACC

TCTCCCTCCTCCACCGCCTTCGCGTTCATGCAAACCAAGGATGAAAAATGCTACCAATTCATCAAGAACACGATAGACACTTTCAACGGAGGAG

CGCCACACACTTATCCCGTCGACGTGTTTGGAAGGCTCTGGGCGATCGACCGGCTCCAGCGCCTCGGAATTTCCCGCTTTTTTGAGCCGGAG

ATTGCTGATTGCTTAAGCCACATCCACAAATTTTGGACGGATAAGGGAGTTTTCAGTGGGAGAGAATCGGAGTTTTGCGACATTGACGATACAT

CCATGGGAATGAGGCTTATGAGGATGCATGGATATGATGTTGATCCAAATGTGCTGAGGAATTTCAAGCAGAAAGATGGTAAATTCTCTTGCTACG

GCGGGCAGATGATCGAGTCGCCTTCTCCGATATACAATCTTTACAGAGCTTCTCAGCTCCGATTTCCCGGCGAGGAAATCCTCGAAGATGCGAA

GAAATTCGCCTACGATTTCTTGAAAGAAAAACTAGCCAACAATCAGATTCTGGATAAATGGGTTATTTCTAAGCACTTGCCTGATGAGATCAAGCTC

GGGCTAGAGATGCCGTGGCTCGCCACCCTACCCCGCGTCGAGGCGAAGTACTACATCCAGTACTACGCCGGCTCCGGCGACGTGTGGATCGGG

AAGACGCTGTACAGGATGCCGGAGATCAGCAACGACACGTACCACGACCTAGCCAAGACGGATTTCAAGAGATGCCAAGCGAAGCATCAGTTCG

AGTGGCTCTACATGCAAGAATGGTACGAGAGCTGCGGCATCGAGGAGTTCGGGATAAGCAGAAAGGACCTTCTGCTTTCCTATTTCTTGGCGACC

GCGAGCATCTTCGAGCTCGAGAGGACCAACGAGCGAATCGCGTGGGCCAAATCGCAGATCATCGCTAAGATGATCACTTCTTTCTTCAACAAGGA

AACTACGTCGGAGGAGGACAAGCGAGCTCTTTTGAACGAGCTCGGAAACATTAATGGCCTCAACGACACAAACGGCGCAGGGAGAGAAGGTGGG

GCCGGTAGCATTGCGCTAGCGACCCTCACTCAGTTCCTCGAGGGATTCGACAGATACACCAGACACCAGCTGAAAAATGCTTGGAGCGTATGGC

TGACGCAGCTGCAACATGGCGAAGCAGACGACGCAGAGCTCCTAACCAACACGTTGAACATCTGCGCCGGCCACATCGCCTTCAGGGAAGAAAT

ACTGGCGCACAACGAGTACAAAACTCTCTCCAACCTAACCAGCAAAATCTGTCGGCAACTTTCTTTCATTCAAAGCGAAAAGGAGATGGGAGTAGA

GGGCGAGATCGCAGCGAAATCGAGCATAAAAAACAAGGAACTCGAAGAAGACATGCAAATGTTGGTGAAGTTGGTGCTTGAGAAATATGGGGGCA

TAGATAGAAATATAAAGAAAGCGTTTTTGGCAGTTGCGAAGACTTATTATTACAGAGCGTATCATGCCGCCGACACCATAGACACACACATGTTTAAA

GTGCTTTTCGAGCCAGTCGCGTGA


Three Site-directed mutagenesis:


Usage and Biology

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 747
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI.rc site found at 159