Difference between revisions of "Part:BBa K1884001"
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Cryptochrome-interacting basic-helix-loop-helix 1(CIB1) is a protein-coded gene. The product of this gene expression is a basic helix-loop-helix (bHLH) protein which would interact with cryptochrome 2 (CRY2), a blue light stimulated photoreceptor, when exposed to blue light. This part is a Gal4 DNA binding domain fused to C terminus of CIB1.
 
Cryptochrome-interacting basic-helix-loop-helix 1(CIB1) is a protein-coded gene. The product of this gene expression is a basic helix-loop-helix (bHLH) protein which would interact with cryptochrome 2 (CRY2), a blue light stimulated photoreceptor, when exposed to blue light. This part is a Gal4 DNA binding domain fused to C terminus of CIB1.
  
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===Usage and Biology===
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===Biology===
  
 
This fusion protein is for use in a yeast-two-hybrid system,and a Gal4 DNA binding domian fused to its C terminus. In order to control DNA transcription by blue light, the system is based on a two-hybrid interaction in which a light-mediated protein brings together two halves of a split transcription factor. CRY2 will disconnected with CIB1 in the dark and halt the DNA transcription.<b>(Fig 1)</b>
 
This fusion protein is for use in a yeast-two-hybrid system,and a Gal4 DNA binding domian fused to its C terminus. In order to control DNA transcription by blue light, the system is based on a two-hybrid interaction in which a light-mediated protein brings together two halves of a split transcription factor. CRY2 will disconnected with CIB1 in the dark and halt the DNA transcription.<b>(Fig 1)</b>
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===Usage===
  
 
BD-CIB1 is 1533bp in length. <b>Fig 2</b> shows the DNA sequence of BD-CIB1 is successfully amplified by PCR from psi-Check2 vector. From this electrophoretogram, we can see the brightness of BD-CIB1 PCR product is rather high compared with DNA Marker, which indicates that the PCR product of BD-CIB1 is in a high concerntration.  
 
BD-CIB1 is 1533bp in length. <b>Fig 2</b> shows the DNA sequence of BD-CIB1 is successfully amplified by PCR from psi-Check2 vector. From this electrophoretogram, we can see the brightness of BD-CIB1 PCR product is rather high compared with DNA Marker, which indicates that the PCR product of BD-CIB1 is in a high concerntration.  
  
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After transmate the plasmid into green algae, we extract genome DNA of green algae. <b>Fig 3-4</b> shows the DNA sequence of BD and CIB1 is successfully amplified by PCR from psi-Check2 vector. From this electrophoretogram, we can see the brightness of BD and CIB1 PCR product is rather high compared with DNA Marker, which indicates that the PCR product of BD-CIB1 is in a high concentration.
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For confirming the gene of our fusion protien gene has been transformate into green algae, we extracted genome DNA of green algae and designed two pairs of primers in order to amplify BD and CIB1 respectively. <b>Fig 3-4</b> shows the DNA sequence of BD and CIB1 are successfully amplified by PCR from psi-Check2 vector. From this electrophoretogram, we can see the brightness of BD and CIB1 PCR product is rather high compared with DNA Marker, which indicates that the PCR product of BD and CIB1 are in a high concentration.
 
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Revision as of 12:32, 18 October 2016


Gal4BD-CIB1

Cryptochrome-interacting basic-helix-loop-helix 1(CIB1) is a protein-coded gene. The product of this gene expression is a basic helix-loop-helix (bHLH) protein which would interact with cryptochrome 2 (CRY2), a blue light stimulated photoreceptor, when exposed to blue light. This part is a Gal4 DNA binding domain fused to C terminus of CIB1.

Biology

This fusion protein is for use in a yeast-two-hybrid system,and a Gal4 DNA binding domian fused to its C terminus. In order to control DNA transcription by blue light, the system is based on a two-hybrid interaction in which a light-mediated protein brings together two halves of a split transcription factor. CRY2 will disconnected with CIB1 in the dark and halt the DNA transcription.(Fig 1)

Figure 1. The diagram of light-mediate controlled yeast-two-hybrid system.


Usage

BD-CIB1 is 1533bp in length. Fig 2 shows the DNA sequence of BD-CIB1 is successfully amplified by PCR from psi-Check2 vector. From this electrophoretogram, we can see the brightness of BD-CIB1 PCR product is rather high compared with DNA Marker, which indicates that the PCR product of BD-CIB1 is in a high concerntration.

For confirming the gene of our fusion protien gene has been transformate into green algae, we extracted genome DNA of green algae and designed two pairs of primers in order to amplify BD and CIB1 respectively. Fig 3-4 shows the DNA sequence of BD and CIB1 are successfully amplified by PCR from psi-Check2 vector. From this electrophoretogram, we can see the brightness of BD and CIB1 PCR product is rather high compared with DNA Marker, which indicates that the PCR product of BD and CIB1 are in a high concentration.

Figure 3 The electrophoretogram of BD PCR product.

Figure 1. The electrophoretogram of CIB1 PCR product.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal XhoI site found at 218
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 637
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 137