Difference between revisions of "Part:BBa K319003"

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The experiment was also done with the promoters [https://parts.igem.org/Part:BBa_K2030000 pAQR1], [https://parts.igem.org/Part:BBa_K2030004 pGLN1], [https://parts.igem.org/Part:BBa_K2030001 pPCK1] and [https://parts.igem.org/Part:BBa_K319003 pTEF1] in the same way, and the results compared against each other. The raw data from the promoter study was normalized against OD<SUB>600</SUB> of that sample, and the mean value of the negative control (cells with p416tef without GFP) was subtracted. The results are shown in <b>Table 1</b>.  
 
The experiment was also done with the promoters [https://parts.igem.org/Part:BBa_K2030000 pAQR1], [https://parts.igem.org/Part:BBa_K2030004 pGLN1], [https://parts.igem.org/Part:BBa_K2030001 pPCK1] and [https://parts.igem.org/Part:BBa_K319003 pTEF1] in the same way, and the results compared against each other. The raw data from the promoter study was normalized against OD<SUB>600</SUB> of that sample, and the mean value of the negative control (cells with p416tef without GFP) was subtracted. The results are shown in <b>Table 1</b>.  
  
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<br><b>Table 1. Expression levels of the promoters pAQR1, pGLN1, pPCK1, PYK2 and <br>
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<br><b>Table 1. Fluorescent levels of GFP under the control of the promoters pAQR1, pGLN1, pPCK1, PYK2 and <br>
 
pTEF1 in glucose and acetate conditions (n=3).</b>
 
pTEF1 in glucose and acetate conditions (n=3).</b>
 
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[[File:T--Chalmers Gothenburg--glucose-acetate-relative.png]]
 
[[File:T--Chalmers Gothenburg--glucose-acetate-relative.png]]
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<br><b>Figure 1. Expression levels of the promoters pAQR1, pGLN1, pPCK1, PYK2 and pTEF1 in glucose and acetate conditions relative the levels of pTEF1. Triplicate runs were made for each promoter and error bars are shown as confidence intervals with p=0.05, using student's t-test. </b>
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<br><b>Figure 1. Fluorescent levels of GFP under the control of the promoters pAQR1, pGLN1, pPCK1, PYK2 and pTEF1 in glucose and acetate conditions relative the levels of pTEF1. Triplicate runs were made for each promoter and error bars are shown as confidence intervals with p=0.05, using student's t-test. </b>
  
  

Revision as of 14:30, 14 October 2016


yeast TEF1 promoter

This is the full length TEF1 promoter including the distal and proximal portions and their regulatory elements.


Contribution

  • Group: [http://2016.igem.org/Team:Chalmers_Gothenburg iGEM Team Chalmers Gothenburg 2016]
  • Author: John Hellgren
  • Summary: A promoter study to characterize this promoter and compare it against several others in two different conditions.

Characterization

A promoter study was performed to characterize this promoter. The reporter gene GFP was cloned into the replicative plasmid p416tef, downstream of the TEF1 promoter. For the glucose conditions, the cells were grown as a preculture in SD -URA + 2 % glucose media overnight, diluted to OD600=0.3 in the same media and cultivated for 3 hours. The expression of GFP was measured using a plate reader with triplicate samples.

The cells were also grown in SD -URA + 0.5 % acetate to compare the expression levels when acetate was the only carbon source, which is connected to our coculture project. For the acetate experiment, the cells were grown as a preculture in SD -URA + 2 % glucose media overnight, washed and diluted to OD600=0.3 in SD -URA + 0.5 % acetate and cultivated for 24 hours before plate reader measurements. The longer cultivation time was due to slow growth with acetate as the carbon source. Furthermore, the reason for the longer cultivation time was to make sure that the GFP produced during the preculture in glucose was degraded.

The experiment was also done with the promoters pAQR1, pGLN1, pPCK1 and pTEF1 in the same way, and the results compared against each other. The raw data from the promoter study was normalized against OD600 of that sample, and the mean value of the negative control (cells with p416tef without GFP) was subtracted. The results are shown in Table 1.


Table 1. Fluorescent levels of GFP under the control of the promoters pAQR1, pGLN1, pPCK1, PYK2 and
pTEF1 in glucose and acetate conditions (n=3).

Promoter Condition
Glucose (fluorescent unit/OD600)
 Acetate (fluorescent unit/OD600)
pAQR1
 303 63
pGLN1
 862 426
pPCK1 235 1721
pPYK2 125 77
pTEF1 1314 1399

In Figure 1 the results are normalized against the expression level of the pTEF1 promoter.

T--Chalmers Gothenburg--glucose-acetate-relative.png
Figure 1. Fluorescent levels of GFP under the control of the promoters pAQR1, pGLN1, pPCK1, PYK2 and pTEF1 in glucose and acetate conditions relative the levels of pTEF1. Triplicate runs were made for each promoter and error bars are shown as confidence intervals with p=0.05, using student's t-test.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 205