Difference between revisions of "Part:BBa K2074126"

 
 
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  ORGANISM  Rumex acetosa
 
  ORGANISM  Rumex acetosa
 
 
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
 
           Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
 
           Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
 
 
           Pentapetalae; Caryophyllales; Polygonaceae; Polygonoideae;
 
           Pentapetalae; Caryophyllales; Polygonaceae; Polygonoideae;
 
 
           Rumiceae; Rumex.
 
           Rumiceae; Rumex.
 
REFERENCE  1  (bases 1 to 1113)
 
REFERENCE  1  (bases 1 to 1113)
 
 
  AUTHORS  Mariotti,B., Manzano,S., Kejnovsky,E., Vyskot,B. and Jamilena,M.
 
  AUTHORS  Mariotti,B., Manzano,S., Kejnovsky,E., Vyskot,B. and Jamilena,M.
 
 
  TITLE    Accumulation of Y-specific satellite DNAs during the evolution of
 
  TITLE    Accumulation of Y-specific satellite DNAs during the evolution of
 
 
           Rumex acetosa sex chromosomes
 
           Rumex acetosa sex chromosomes
 
 
  JOURNAL  Mol. Genet. Genomics 281 (3), 249-259 (2009)
 
  JOURNAL  Mol. Genet. Genomics 281 (3), 249-259 (2009)
 
 
   PUBMED  19085011
 
   PUBMED  19085011
 
REFERENCE  2  (bases 1 to 1113)
 
REFERENCE  2  (bases 1 to 1113)
 
 
  AUTHORS  Beatrice,M., Manzano,S. and Jamilena,M.
 
  AUTHORS  Beatrice,M., Manzano,S. and Jamilena,M.
 
 
  TITLE    Direct Submission
 
  TITLE    Direct Submission
 
 
  JOURNAL  Submitted (14-APR-2008) Applied Biology, University of Almeria,
 
  JOURNAL  Submitted (14-APR-2008) Applied Biology, University of Almeria,
 
 
           Carretera de Sacramento S/N, Almeria 04120, Spain
 
           Carretera de Sacramento S/N, Almeria 04120, Spain
 
FEATURES            Location/Qualifiers
 
FEATURES            Location/Qualifiers
 
 
     source          1..1113
 
     source          1..1113
 
 
                     /organism="Rumex acetosa"
 
                     /organism="Rumex acetosa"
 
 
                     /mol_type="genomic DNA"
 
                     /mol_type="genomic DNA"
 
 
                     /db_xref="taxon:41241"
 
                     /db_xref="taxon:41241"
 
 
                     /clone="III-ACE8"
 
                     /clone="III-ACE8"
 
 
     repeat_region  1..1113
 
     repeat_region  1..1113
 
 
                     /rpt_type=tandem
 
                     /rpt_type=tandem
 
 
                     /satellite="satellite:RAYSIII"
 
                     /satellite="satellite:RAYSIII"
 
ORIGIN       
 
ORIGIN       
  
 
       1 aatcgatcaa aatggtcggt tcgaccctct aaggtccaaa tgggtcattt atcgacgttt
 
       1 aatcgatcaa aatggtcggt tcgaccctct aaggtccaaa tgggtcattt atcgacgttt
 
 
       61 tattcatggt agagccaata tgtacgtttt attttagaag atcgactccc aagtaaacta
 
       61 tattcatggt agagccaata tgtacgtttt attttagaag atcgactccc aagtaaacta
 
 
     121 atattgatcg aaatggtaat gtgagcccta ttaggcacaa tttgatcata tagagacgtt
 
     121 atattgatcg aaatggtaat gtgagcccta ttaggcacaa tttgatcata tagagacgtt
 
 
     181 ttattaatgt tcgacctaat atatacttat tattttacta aatcaactca caagtagaca
 
     181 ttattaatgt tcgacctaat atatacttat tattttacta aatcaactca caagtagaca
 
 
     241 aaaccaatta aaatggtcga tggggctcag agtgatcaaa taaggcccaa ttgcatcatt
 
     241 aaaccaatta aaatggtcga tggggctcag agtgatcaaa taaggcccaa ttgcatcatt
 
 
     301 tatcgtaatt ttatcaaaat tcgagtaaat gtatacttca atgtcacttg atagaccaag
 
     301 tatcgtaatt ttatcaaaat tcgagtaaat gtatacttca atgtcacttg atagaccaag
 
 
     361 ttcactaaac caataaaaat tgcttattag gccctatatg gaccaatatg gcccaattgc
 
     361 ttcactaaac caataaaaat tgcttattag gccctatatg gaccaatatg gcccaattgc
 
 
     421 atcattcatc attgttttat tcaactttga gctaacaaat gtttgttatt tcaatagatc
 
     421 atcattcatc attgttttat tcaactttga gctaacaaat gtttgttatt tcaatagatc
 
 
     481 gactccaaaa gagactaaaa tcaaacaaat gagttgtttg gatcctataa tgcaaaattg
 
     481 gactccaaaa gagactaaaa tcaaacaaat gagttgtttg gatcctataa tgcaaaattg
 
 
     541 gataaatttg tcgacgtttt attcacgttc aagataaaat atacttgtta ttttactaga
 
     541 gataaatttg tcgacgtttt attcacgttc aagataaaat atacttgtta ttttactaga
 
 
     601 tcaactccca tgtagaataa aatcgatcga aatgatctaa tgggcccaac gtgtcccaat
 
     601 tcaactccca tgtagaataa aatcgatcga aatgatctaa tgggcccaac gtgtcccaat
 
 
     661 acgacccaat tgcatcattt tatcatcatt ttatcgaaat tcaagtacat catgtatact
 
     661 acgacccaat tgcatcattt tatcatcatt ttatcgaaat tcaagtacat catgtatact
 
 
     721 taaatgtcac ttgatagact cccaagttga ctcaaccaat agaaattgca tattgggccc
 
     721 taaatgtcac ttgatagact cccaagttga ctcaaccaat agaaattgca tattgggccc
 
 
     781 tatatggagt aatatggccc aatttcatca taaatcattg ttttattcaa cttcgagcta
 
     781 tatatggagt aatatggccc aatttcatca taaatcattg ttttattcaa cttcgagcta
 
 
     841 acaaatgttt gttatttcaa tatattgact ccaacgtaga ctaaaatcga aatggaacca
 
     841 acaaatgttt gttatttcaa tatattgact ccaacgtaga ctaaaatcga aatggaacca
 
 
     901 taaagccaaa ttgcatcatg catcgatgtt ttattcaagt tcaagctaat atatgtttgt
 
     901 taaagccaaa ttgcatcatg catcgatgtt ttattcaagt tcaagctaat atatgtttgt
 
 
     961 tatttcaata gatcaactac caactagact aaaatcgatc aaaatggtcc attgggccca
 
     961 tatttcaata gatcaactac caactagact aaaatcgatc aaaatggtcc attgggccca
 
 
     1021 aaaatactca attgcatcat tcatcgaggc tttattcaac ttctagctaa taaatgtttg
 
     1021 aaaatactca attgcatcat tcatcgaggc tttattcaac ttctagctaa taaatgtttg
 
 
     1081 ttatttcaat agatcaactc cttagtagac taa
 
     1081 ttatttcaat agatcaactc cttagtagac taa
  

Latest revision as of 17:01, 11 October 2016


III-ACE8 satellite RAYSIII by Rumex acetosa

The DNA sequences deposited in the EMBL database under the accession number EU644727.


LOCUS EU644727 1113 bp DNA linear PLN 03-MAR-2009 DEFINITION Rumex acetosa clone III-ACE8 satellite RAYSIII sequence. ACCESSION EU644727 VERSION EU644727.1 GI:194396239 KEYWORDS . SOURCE Rumex acetosa (garden sorrel)

ORGANISM  Rumex acetosa
          Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
          Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
          Pentapetalae; Caryophyllales; Polygonaceae; Polygonoideae;
          Rumiceae; Rumex.

REFERENCE 1 (bases 1 to 1113)

AUTHORS   Mariotti,B., Manzano,S., Kejnovsky,E., Vyskot,B. and Jamilena,M.
TITLE     Accumulation of Y-specific satellite DNAs during the evolution of
          Rumex acetosa sex chromosomes
JOURNAL   Mol. Genet. Genomics 281 (3), 249-259 (2009)
 PUBMED   19085011

REFERENCE 2 (bases 1 to 1113)

AUTHORS   Beatrice,M., Manzano,S. and Jamilena,M.
TITLE     Direct Submission
JOURNAL   Submitted (14-APR-2008) Applied Biology, University of Almeria,
          Carretera de Sacramento S/N, Almeria 04120, Spain

FEATURES Location/Qualifiers

   source          1..1113
                   /organism="Rumex acetosa"
                   /mol_type="genomic DNA"
                   /db_xref="taxon:41241"
                   /clone="III-ACE8"
   repeat_region   1..1113
                   /rpt_type=tandem
                   /satellite="satellite:RAYSIII"

ORIGIN

      1 aatcgatcaa aatggtcggt tcgaccctct aaggtccaaa tgggtcattt atcgacgttt
     61 tattcatggt agagccaata tgtacgtttt attttagaag atcgactccc aagtaaacta
    121 atattgatcg aaatggtaat gtgagcccta ttaggcacaa tttgatcata tagagacgtt
    181 ttattaatgt tcgacctaat atatacttat tattttacta aatcaactca caagtagaca
    241 aaaccaatta aaatggtcga tggggctcag agtgatcaaa taaggcccaa ttgcatcatt
    301 tatcgtaatt ttatcaaaat tcgagtaaat gtatacttca atgtcacttg atagaccaag
    361 ttcactaaac caataaaaat tgcttattag gccctatatg gaccaatatg gcccaattgc
    421 atcattcatc attgttttat tcaactttga gctaacaaat gtttgttatt tcaatagatc
    481 gactccaaaa gagactaaaa tcaaacaaat gagttgtttg gatcctataa tgcaaaattg
    541 gataaatttg tcgacgtttt attcacgttc aagataaaat atacttgtta ttttactaga
    601 tcaactccca tgtagaataa aatcgatcga aatgatctaa tgggcccaac gtgtcccaat
    661 acgacccaat tgcatcattt tatcatcatt ttatcgaaat tcaagtacat catgtatact
    721 taaatgtcac ttgatagact cccaagttga ctcaaccaat agaaattgca tattgggccc
    781 tatatggagt aatatggccc aatttcatca taaatcattg ttttattcaa cttcgagcta
    841 acaaatgttt gttatttcaa tatattgact ccaacgtaga ctaaaatcga aatggaacca
    901 taaagccaaa ttgcatcatg catcgatgtt ttattcaagt tcaagctaat atatgtttgt
    961 tatttcaata gatcaactac caactagact aaaatcgatc aaaatggtcc attgggccca
   1021 aaaatactca attgcatcat tcatcgaggc tttattcaac ttctagctaa taaatgtttg
   1081 ttatttcaat agatcaactc cttagtagac taa

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 520
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]