Difference between revisions of "Part:BBa K2074126"
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ORGANISM Rumex acetosa | ORGANISM Rumex acetosa | ||
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Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; | ||
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Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; | Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; | ||
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Pentapetalae; Caryophyllales; Polygonaceae; Polygonoideae; | Pentapetalae; Caryophyllales; Polygonaceae; Polygonoideae; | ||
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Rumiceae; Rumex. | Rumiceae; Rumex. | ||
REFERENCE 1 (bases 1 to 1113) | REFERENCE 1 (bases 1 to 1113) | ||
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AUTHORS Mariotti,B., Manzano,S., Kejnovsky,E., Vyskot,B. and Jamilena,M. | AUTHORS Mariotti,B., Manzano,S., Kejnovsky,E., Vyskot,B. and Jamilena,M. | ||
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TITLE Accumulation of Y-specific satellite DNAs during the evolution of | TITLE Accumulation of Y-specific satellite DNAs during the evolution of | ||
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Rumex acetosa sex chromosomes | Rumex acetosa sex chromosomes | ||
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JOURNAL Mol. Genet. Genomics 281 (3), 249-259 (2009) | JOURNAL Mol. Genet. Genomics 281 (3), 249-259 (2009) | ||
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PUBMED 19085011 | PUBMED 19085011 | ||
REFERENCE 2 (bases 1 to 1113) | REFERENCE 2 (bases 1 to 1113) | ||
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AUTHORS Beatrice,M., Manzano,S. and Jamilena,M. | AUTHORS Beatrice,M., Manzano,S. and Jamilena,M. | ||
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TITLE Direct Submission | TITLE Direct Submission | ||
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JOURNAL Submitted (14-APR-2008) Applied Biology, University of Almeria, | JOURNAL Submitted (14-APR-2008) Applied Biology, University of Almeria, | ||
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Carretera de Sacramento S/N, Almeria 04120, Spain | Carretera de Sacramento S/N, Almeria 04120, Spain | ||
FEATURES Location/Qualifiers | FEATURES Location/Qualifiers | ||
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source 1..1113 | source 1..1113 | ||
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/organism="Rumex acetosa" | /organism="Rumex acetosa" | ||
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/mol_type="genomic DNA" | /mol_type="genomic DNA" | ||
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/db_xref="taxon:41241" | /db_xref="taxon:41241" | ||
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/clone="III-ACE8" | /clone="III-ACE8" | ||
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repeat_region 1..1113 | repeat_region 1..1113 | ||
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/rpt_type=tandem | /rpt_type=tandem | ||
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/satellite="satellite:RAYSIII" | /satellite="satellite:RAYSIII" | ||
ORIGIN | ORIGIN | ||
1 aatcgatcaa aatggtcggt tcgaccctct aaggtccaaa tgggtcattt atcgacgttt | 1 aatcgatcaa aatggtcggt tcgaccctct aaggtccaaa tgggtcattt atcgacgttt | ||
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61 tattcatggt agagccaata tgtacgtttt attttagaag atcgactccc aagtaaacta | 61 tattcatggt agagccaata tgtacgtttt attttagaag atcgactccc aagtaaacta | ||
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121 atattgatcg aaatggtaat gtgagcccta ttaggcacaa tttgatcata tagagacgtt | 121 atattgatcg aaatggtaat gtgagcccta ttaggcacaa tttgatcata tagagacgtt | ||
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181 ttattaatgt tcgacctaat atatacttat tattttacta aatcaactca caagtagaca | 181 ttattaatgt tcgacctaat atatacttat tattttacta aatcaactca caagtagaca | ||
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241 aaaccaatta aaatggtcga tggggctcag agtgatcaaa taaggcccaa ttgcatcatt | 241 aaaccaatta aaatggtcga tggggctcag agtgatcaaa taaggcccaa ttgcatcatt | ||
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301 tatcgtaatt ttatcaaaat tcgagtaaat gtatacttca atgtcacttg atagaccaag | 301 tatcgtaatt ttatcaaaat tcgagtaaat gtatacttca atgtcacttg atagaccaag | ||
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361 ttcactaaac caataaaaat tgcttattag gccctatatg gaccaatatg gcccaattgc | 361 ttcactaaac caataaaaat tgcttattag gccctatatg gaccaatatg gcccaattgc | ||
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421 atcattcatc attgttttat tcaactttga gctaacaaat gtttgttatt tcaatagatc | 421 atcattcatc attgttttat tcaactttga gctaacaaat gtttgttatt tcaatagatc | ||
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481 gactccaaaa gagactaaaa tcaaacaaat gagttgtttg gatcctataa tgcaaaattg | 481 gactccaaaa gagactaaaa tcaaacaaat gagttgtttg gatcctataa tgcaaaattg | ||
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541 gataaatttg tcgacgtttt attcacgttc aagataaaat atacttgtta ttttactaga | 541 gataaatttg tcgacgtttt attcacgttc aagataaaat atacttgtta ttttactaga | ||
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601 tcaactccca tgtagaataa aatcgatcga aatgatctaa tgggcccaac gtgtcccaat | 601 tcaactccca tgtagaataa aatcgatcga aatgatctaa tgggcccaac gtgtcccaat | ||
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661 acgacccaat tgcatcattt tatcatcatt ttatcgaaat tcaagtacat catgtatact | 661 acgacccaat tgcatcattt tatcatcatt ttatcgaaat tcaagtacat catgtatact | ||
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721 taaatgtcac ttgatagact cccaagttga ctcaaccaat agaaattgca tattgggccc | 721 taaatgtcac ttgatagact cccaagttga ctcaaccaat agaaattgca tattgggccc | ||
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781 tatatggagt aatatggccc aatttcatca taaatcattg ttttattcaa cttcgagcta | 781 tatatggagt aatatggccc aatttcatca taaatcattg ttttattcaa cttcgagcta | ||
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841 acaaatgttt gttatttcaa tatattgact ccaacgtaga ctaaaatcga aatggaacca | 841 acaaatgttt gttatttcaa tatattgact ccaacgtaga ctaaaatcga aatggaacca | ||
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901 taaagccaaa ttgcatcatg catcgatgtt ttattcaagt tcaagctaat atatgtttgt | 901 taaagccaaa ttgcatcatg catcgatgtt ttattcaagt tcaagctaat atatgtttgt | ||
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961 tatttcaata gatcaactac caactagact aaaatcgatc aaaatggtcc attgggccca | 961 tatttcaata gatcaactac caactagact aaaatcgatc aaaatggtcc attgggccca | ||
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1021 aaaatactca attgcatcat tcatcgaggc tttattcaac ttctagctaa taaatgtttg | 1021 aaaatactca attgcatcat tcatcgaggc tttattcaac ttctagctaa taaatgtttg | ||
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1081 ttatttcaat agatcaactc cttagtagac taa | 1081 ttatttcaat agatcaactc cttagtagac taa | ||
Latest revision as of 17:01, 11 October 2016
III-ACE8 satellite RAYSIII by Rumex acetosa
The DNA sequences deposited in the EMBL database under the accession number EU644727.
LOCUS EU644727 1113 bp DNA linear PLN 03-MAR-2009
DEFINITION Rumex acetosa clone III-ACE8 satellite RAYSIII sequence.
ACCESSION EU644727
VERSION EU644727.1 GI:194396239
KEYWORDS .
SOURCE Rumex acetosa (garden sorrel)
ORGANISM Rumex acetosa Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Polygonaceae; Polygonoideae; Rumiceae; Rumex.
REFERENCE 1 (bases 1 to 1113)
AUTHORS Mariotti,B., Manzano,S., Kejnovsky,E., Vyskot,B. and Jamilena,M. TITLE Accumulation of Y-specific satellite DNAs during the evolution of Rumex acetosa sex chromosomes JOURNAL Mol. Genet. Genomics 281 (3), 249-259 (2009) PUBMED 19085011
REFERENCE 2 (bases 1 to 1113)
AUTHORS Beatrice,M., Manzano,S. and Jamilena,M. TITLE Direct Submission JOURNAL Submitted (14-APR-2008) Applied Biology, University of Almeria, Carretera de Sacramento S/N, Almeria 04120, Spain
FEATURES Location/Qualifiers
source 1..1113 /organism="Rumex acetosa" /mol_type="genomic DNA" /db_xref="taxon:41241" /clone="III-ACE8" repeat_region 1..1113 /rpt_type=tandem /satellite="satellite:RAYSIII"
ORIGIN
1 aatcgatcaa aatggtcggt tcgaccctct aaggtccaaa tgggtcattt atcgacgttt 61 tattcatggt agagccaata tgtacgtttt attttagaag atcgactccc aagtaaacta 121 atattgatcg aaatggtaat gtgagcccta ttaggcacaa tttgatcata tagagacgtt 181 ttattaatgt tcgacctaat atatacttat tattttacta aatcaactca caagtagaca 241 aaaccaatta aaatggtcga tggggctcag agtgatcaaa taaggcccaa ttgcatcatt 301 tatcgtaatt ttatcaaaat tcgagtaaat gtatacttca atgtcacttg atagaccaag 361 ttcactaaac caataaaaat tgcttattag gccctatatg gaccaatatg gcccaattgc 421 atcattcatc attgttttat tcaactttga gctaacaaat gtttgttatt tcaatagatc 481 gactccaaaa gagactaaaa tcaaacaaat gagttgtttg gatcctataa tgcaaaattg 541 gataaatttg tcgacgtttt attcacgttc aagataaaat atacttgtta ttttactaga 601 tcaactccca tgtagaataa aatcgatcga aatgatctaa tgggcccaac gtgtcccaat 661 acgacccaat tgcatcattt tatcatcatt ttatcgaaat tcaagtacat catgtatact 721 taaatgtcac ttgatagact cccaagttga ctcaaccaat agaaattgca tattgggccc 781 tatatggagt aatatggccc aatttcatca taaatcattg ttttattcaa cttcgagcta 841 acaaatgttt gttatttcaa tatattgact ccaacgtaga ctaaaatcga aatggaacca 901 taaagccaaa ttgcatcatg catcgatgtt ttattcaagt tcaagctaat atatgtttgt 961 tatttcaata gatcaactac caactagact aaaatcgatc aaaatggtcc attgggccca 1021 aaaatactca attgcatcat tcatcgaggc tttattcaac ttctagctaa taaatgtttg 1081 ttatttcaat agatcaactc cttagtagac taa
Sequence and Features
Assembly Compatibility:
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21INCOMPATIBLE WITH RFC[21]Illegal BamHI site found at 520
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]