Difference between revisions of "Part:BBa K2010000:Design"
Williamcho (Talk | contribs) m |
Williamcho (Talk | contribs) |
||
| Line 9: | Line 9: | ||
This sequence was optimized for E. coli K12 using the Codon Optimization Tool from the IDT website. | This sequence was optimized for E. coli K12 using the Codon Optimization Tool from the IDT website. | ||
| + | The T7 promoter was used in order to have strong, inducible transcription, in conjunction with NEB’s T7 Express lysY/Iq Competent E. coli. | ||
| + | RBS 34 was used for standard efficiency. | ||
| + | |||
| + | The GGS linker was used to prevent the His-tag from interfering with the folding of PETase. | ||
| + | |||
| + | The His-tag was included for His-tag purification. | ||
===Source=== | ===Source=== | ||
| + | |||
| + | T7 promoter: BBa_I712074 | ||
| + | RBS: BBa_B0034 | ||
This part, originally named ISF6_4831, comes from Ideonella sakaiensis, identified in "A bacterium that degrades and assimilates poly(ethylene terephthalate)" (Yoshida et al. 2016). | This part, originally named ISF6_4831, comes from Ideonella sakaiensis, identified in "A bacterium that degrades and assimilates poly(ethylene terephthalate)" (Yoshida et al. 2016). | ||
===References=== | ===References=== | ||
Revision as of 19:21, 2 October 2016
PETase (PET-degrading enzyme, origin I. sakaiensis)
Assembly Compatibility:
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000INCOMPATIBLE WITH RFC[1000]Illegal SapI site found at 426
Design Notes
This sequence was optimized for E. coli K12 using the Codon Optimization Tool from the IDT website.
The T7 promoter was used in order to have strong, inducible transcription, in conjunction with NEB’s T7 Express lysY/Iq Competent E. coli.
RBS 34 was used for standard efficiency.
The GGS linker was used to prevent the His-tag from interfering with the folding of PETase.
The His-tag was included for His-tag purification.
Source
T7 promoter: BBa_I712074 RBS: BBa_B0034
This part, originally named ISF6_4831, comes from Ideonella sakaiensis, identified in "A bacterium that degrades and assimilates poly(ethylene terephthalate)" (Yoshida et al. 2016).