Difference between revisions of "Part:BBa K1741013"
 
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<partinfo>BBa_K1741013 short</partinfo>
 
<partinfo>BBa_K1741013 short</partinfo>
  
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A weak hairpin introduced to 5’UTR slightly lowers transcription/translation. Will be extended to a thermometer, actually we see no temp. dependence.
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A hairpin introduced to 5’UTR of proC slightly lowers transcription/translation. We are planning to extend it to use it as a thermometer, as for now we do not see temperature dependence.
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https://static.igem.org/mediawiki/parts/b/ba/UAMpoznanproChairpin.jpg
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This is the potential hairpin structure.
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===Results===
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Legend:
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proC [[https://parts.igem.org/Part:BBa_K1741012  BBa_K1741012]]
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proC with a hairpin in 5'UTR [[https://parts.igem.org/Part:BBa_K1741013  BBa_K1741013]]
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proD [[https://parts.igem.org/Part:BBa_K1741014  BBa_K1741014]]
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https://static.igem.org/mediawiki/parts/3/35/Teamuamprocdiffsugarsgraph.png
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https://static.igem.org/mediawiki/parts/8/86/Teamuampoznanprochairpindiffsuagrsgraph.png
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https://static.igem.org/mediawiki/parts/d/df/Teamuampoznanproddiffsugarsgraph.png
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The sfGFP fluorescence [RFU] was measured using Tecan fluorometer.
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We observed that proD is up to three times stronger than proC. The hairpin concept has to be further elaborated upon and improved so as to stop translation in lower temperatures.
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<!-- Add more about the biology of this part here
 
<!-- Add more about the biology of this part here

Latest revision as of 08:13, 27 September 2015

sfGFP under proC promoter with a hairpin in 5'UTR

A hairpin introduced to 5’UTR of proC slightly lowers transcription/translation. We are planning to extend it to use it as a thermometer, as for now we do not see temperature dependence.

UAMpoznanproChairpin.jpg

This is the potential hairpin structure.


Results

Legend:

proC [BBa_K1741012]

proC with a hairpin in 5'UTR [BBa_K1741013]

proD [BBa_K1741014]


Teamuamprocdiffsugarsgraph.png

Teamuampoznanprochairpindiffsuagrsgraph.png

Teamuampoznanproddiffsugarsgraph.png

The sfGFP fluorescence [RFU] was measured using Tecan fluorometer.

We observed that proD is up to three times stronger than proC. The hairpin concept has to be further elaborated upon and improved so as to stop translation in lower temperatures.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 101
    Illegal SapI.rc site found at 232