Difference between revisions of "Repository:iGEM 2007 DNA distribution"

m (Repository:GEM 2007 DNA distribution moved to Repository:iGEM 2007 DNA distribution)
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Antibiotic resitance:
 
Antibiotic resitance:
  
How it was tested.
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We tested the antibiotic resistance of each part sent out in the Kit of Parts by growing it in broth containing each of our 4 antibiotics.  The test was done on a 384-deepwell plate filled with EZ Rich Defined Media which contained a cresol red indicator dye and the appropriate antibiotic.  Each quadrant of the test plate contains one of the four antibiotics into which the part is inoculated (see layout below).  After growing for 18hrs at 37C, images from each of the plates were collected.  Since the broth contains a cresol red indicator that changes as the pH of the media decreases, you can tell whether the part grew by noting which of the wells is yellow since as the cells grow, the media becomes more acidic.
Results for each source plate.
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{| aligh="right" border="1" cellpadding="4" style="text-align:center"
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|+ '''384-deepwell test plate antibiotic quadrant layout:'''
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|-
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!width="50"| !! width="50"|1 !! width="50"|2 !! width="50"|3 !! width="50"|4 !! width="50"|...
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|-
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! A
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| style="background:#ff9900;" | Amp || style="background:#66ff66;" | Cm || style="background:#ff9900;" | Amp || style="background:#66ff66;" | Cm ||
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|-
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! B
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| style="background:#ffff66;" | Tet || style="background:#ff6666;" | Kan || style="background:#ffff66;" | Tet || style="background:#ff6666;" | Kan ||
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|-
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! C
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| style="background:#ff9900;" | Amp || style="background:#66ff66;" | Cm || style="background:#ff9900;" | Amp || style="background:#66ff66;" | Cm ||
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|-
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! D
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| style="background:#ffff66;" | Tet || style="background:#ff6666;" | Kan || style="background:#ffff66;" | Tet || style="background:#ff6666;" | Kan ||
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|-
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! ...
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| || || || ||
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|}
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Results for each source plate:
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[[Repository:iGEM 2007 DNA distribution/AB_Test/Source Plate 1|Source Plate 1]]
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[[Repository:iGEM 2007 DNA distribution/AB_Test/Source Plate 2|Source Plate 2]]
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[[Repository:iGEM 2007 DNA distribution/AB_Test/Source Plate 3|Source Plate 3]]
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[[Repository:iGEM 2007 DNA distribution/AB_Test/Source Plate 4|Source Plate 4]]
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[[Repository:iGEM 2007 DNA distribution/AB_Test/Source Plate 5|Source Plate 5]]
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[[Repository:iGEM 2007 DNA distribution/AB_Test/Source Plate 6|Source Plate 6]]
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[[Repository:iGEM 2007 DNA distribution/AB_Test/Source Plate 7|Source Plate 7]]
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[[Repository:iGEM 2007 DNA distribution/AB_Test/Source Plate 8|Source Plate 8]]
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[[Repository:iGEM 2007 DNA distribution/AB_Test/Source Plate 9|Source Plate 9]]
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[[Repository:iGEM 2007 DNA distribution/AB_Test/Source Plate 10|Source Plate 10]]
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[[Repository:iGEM 2007 DNA distribution/AB_Test/Source Plate 11|Source Plate 11]]
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[[Repository:iGEM 2007 DNA distribution/AB_Test/Source Plate 12|Source Plate 12]]
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[[Repository:iGEM 2007 DNA distribution/AB_Test/Source Plate 13|Source Plate 13]]
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[[Repository:iGEM 2007 DNA distribution/AB_Test/Source Plate 14|Source Plate 14]]
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[[Repository:iGEM 2007 DNA distribution/AB_Test/Source Plate 15|Source Plate 15]]
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[[Repository:iGEM 2007 DNA distribution/AB_Test/Source Plate 16|Source Plate 16]]

Revision as of 15:03, 19 April 2007

From Mid-April to Early May, the staff at the Registry prepared the Kit of Parts that will be sent to the 2007 iGEM teams.

Here is some useful information about the steps taken in that process.

Quality Control

Antibiotic resitance:

We tested the antibiotic resistance of each part sent out in the Kit of Parts by growing it in broth containing each of our 4 antibiotics. The test was done on a 384-deepwell plate filled with EZ Rich Defined Media which contained a cresol red indicator dye and the appropriate antibiotic. Each quadrant of the test plate contains one of the four antibiotics into which the part is inoculated (see layout below). After growing for 18hrs at 37C, images from each of the plates were collected. Since the broth contains a cresol red indicator that changes as the pH of the media decreases, you can tell whether the part grew by noting which of the wells is yellow since as the cells grow, the media becomes more acidic.


384-deepwell test plate antibiotic quadrant layout:
1 2 3 4 ...
A Amp Cm Amp Cm
B Tet Kan Tet Kan
C Amp Cm Amp Cm
D Tet Kan Tet Kan
...


Results for each source plate:

Source Plate 1

Source Plate 2

Source Plate 3

Source Plate 4

Source Plate 5

Source Plate 6

Source Plate 7

Source Plate 8

Source Plate 9

Source Plate 10

Source Plate 11

Source Plate 12

Source Plate 13

Source Plate 14

Source Plate 15

Source Plate 16