Difference between revisions of "Part:BBa K1694044"

Line 3: Line 3:
 
<h1>'''Introduction:'''</h1>
 
<h1>'''Introduction:'''</h1>
 
To prove that our scFv can actually bind on to the antigen on cancer cells, we connected each scFv with a different fluorescence protein. Therefore we could use fluorescence microscope to clearly observe if the E. coli has produced scFv proteins. Currently,we built three different scFv connected with their respectively fluorescence protein, which are Anti-VEGF+GFP, Anti-EGFR+RFP, Anti-HER2+BFP. When applied on cell staining, we can identify the antigen distribution on cancer cells by observing the fluorescence. Furthermore, if we use the three scFv simultaneously, we can also detect multiple markers.  
 
To prove that our scFv can actually bind on to the antigen on cancer cells, we connected each scFv with a different fluorescence protein. Therefore we could use fluorescence microscope to clearly observe if the E. coli has produced scFv proteins. Currently,we built three different scFv connected with their respectively fluorescence protein, which are Anti-VEGF+GFP, Anti-EGFR+RFP, Anti-HER2+BFP. When applied on cell staining, we can identify the antigen distribution on cancer cells by observing the fluorescence. Furthermore, if we use the three scFv simultaneously, we can also detect multiple markers.  
 +
 +
 +
 +
<p style="font-size:120%">'''2. Transformation of single plasmid'''</p>
 +
 +
 +
To prove that our scFv can actually bind on to the antigen on cancer cells, we connected each scFv with a different fluorescence protein. Therefore we could use fluorescence microscope to clearly observe if the ''E. coli'' has produced scFv proteins. Currently, we built three different scFv connected with their respectively fluorescence protein. When applied on cell staining, we can identify the antigen distribution on cancer cells by observing the fluorescence. Furthermore, if we use the three scFv simultaneously, we can also detect multiple markers.
 +
 +
<br>
 +
''' (1) Parts:'''
 +
[[File:TR.png|600px|thumb|center|'''Fig.13''' Transformation of single plasmid]]
 +
[[File:EGFRRFP.png|900px|thumb|center|'''Fig.14''' Pcons+RBS+Lpp-OmpA-N+Anti-EGFR+RBS+RFP+Ter]]
 +
<br>
 +
[[File:EGFRGFP.png|900px|thumb|center|'''Fig.15''' Pcons+RBS+Lpp-OmpA-N+Anti-EGFR+RBS+GFP+Ter]]
 +
<br>
 +
 +
''' (2) Cell staining experiment:'''
 +
After creating the part of scFv and transforming them into our ''E. coli'', we were going to prove that our detectors have successfully displayed scFv of anti-EGFR. To prove this, we have decided to undergo the cell staining experiment by using our ''E. coli'' to detect the EGFR in the SKOV-3 cancer cell lines. SKOV-3 is a kind of epithelial cell that expressed markers such as EGFR.
 +
<br>
 +
<br>
 +
''' (3) Staining results:'''
 +
 +
<br>
 +
<div style="display: block; height: 250pt;">
 +
[[File:Co3.png|400px|thumb|left|'''Fig.16''' As results,there is no red fluorescent ''E. coli'' stick on the cell’s surface as there is no specific scFv displayed around the ''E. coli''.]]
 +
[[File:EGFPRFPCELL1.png|400px|thumb|left|'''Fig.17''' There are green fluorescent anti-EGFR ''E. coli'' stick on the cell’s surface as the anti-EGFR probes on ''E. coli'' successfully detect and bind with EGFR.]]
 +
</div>
 +
 +
<div style="display: block; height: 250pt;">
 +
 +
[[File:Ng.png|400px|thumb|left|'''Fig.18''' As results,there is no green fluorescent ''E. coli'' stick on the cell’s surface as there is no specific scFv displayed around the ''E. coli''.]]
 +
[[File:EGFPGFPCELL1.png|400px|thumb|left|'''Fig.19''' There are green fluorescent anti-EGFR ''E. coli'' stick on the cell’s surface as the anti-EGFR probes on ''E. coli'' successfully detect and bind with EGFR.]]
 +
</div>
 +
<div style="display: block; height: 300pt;">
 +
[[File:Ng.png|400px|thumb|left|'''Fig.20''' As results,there is no green fluorescent ''E. coli'' stick on the cell’s surface as there is no specific scFv displayed around the ''E. coli''.]]
 +
[[File:EGFPAMILCPCELL.png|400px|thumb|left|'''Fig.21''' There are blue chromoprotein anti-EGFR ''E. coli'' stick on the cell’s surface as the anti-EGFR probes on ''E. coli'' successfully detect and bind with EGFR.]]
 +
</div>
 +
 +
 +
 +
 
<!-- Add more about the biology of this part here
 
<!-- Add more about the biology of this part here
 
===Usage and Biology===
 
===Usage and Biology===

Revision as of 19:53, 19 September 2015

Pcons+B0034+Lpp-OmpA-N+scFv(Anti-EGFR)+B0030+RFP+J61048

Introduction:

To prove that our scFv can actually bind on to the antigen on cancer cells, we connected each scFv with a different fluorescence protein. Therefore we could use fluorescence microscope to clearly observe if the E. coli has produced scFv proteins. Currently,we built three different scFv connected with their respectively fluorescence protein, which are Anti-VEGF+GFP, Anti-EGFR+RFP, Anti-HER2+BFP. When applied on cell staining, we can identify the antigen distribution on cancer cells by observing the fluorescence. Furthermore, if we use the three scFv simultaneously, we can also detect multiple markers.


2. Transformation of single plasmid


To prove that our scFv can actually bind on to the antigen on cancer cells, we connected each scFv with a different fluorescence protein. Therefore we could use fluorescence microscope to clearly observe if the E. coli has produced scFv proteins. Currently, we built three different scFv connected with their respectively fluorescence protein. When applied on cell staining, we can identify the antigen distribution on cancer cells by observing the fluorescence. Furthermore, if we use the three scFv simultaneously, we can also detect multiple markers.


(1) Parts:

Fig.13 Transformation of single plasmid
Fig.14 Pcons+RBS+Lpp-OmpA-N+Anti-EGFR+RBS+RFP+Ter


Fig.15 Pcons+RBS+Lpp-OmpA-N+Anti-EGFR+RBS+GFP+Ter


(2) Cell staining experiment: After creating the part of scFv and transforming them into our E. coli, we were going to prove that our detectors have successfully displayed scFv of anti-EGFR. To prove this, we have decided to undergo the cell staining experiment by using our E. coli to detect the EGFR in the SKOV-3 cancer cell lines. SKOV-3 is a kind of epithelial cell that expressed markers such as EGFR.

(3) Staining results:


Fig.16 As results,there is no red fluorescent E. coli stick on the cell’s surface as there is no specific scFv displayed around the E. coli.
Fig.17 There are green fluorescent anti-EGFR E. coli stick on the cell’s surface as the anti-EGFR probes on E. coli successfully detect and bind with EGFR.
Fig.18 As results,there is no green fluorescent E. coli stick on the cell’s surface as there is no specific scFv displayed around the E. coli.
Fig.19 There are green fluorescent anti-EGFR E. coli stick on the cell’s surface as the anti-EGFR probes on E. coli successfully detect and bind with EGFR.
Fig.20 As results,there is no green fluorescent E. coli stick on the cell’s surface as there is no specific scFv displayed around the E. coli.
Fig.21 There are blue chromoprotein anti-EGFR E. coli stick on the cell’s surface as the anti-EGFR probes on E. coli successfully detect and bind with EGFR.



Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 7
    Illegal NheI site found at 30
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 451
    Illegal NgoMIV site found at 1987
    Illegal AgeI site found at 1828
    Illegal AgeI site found at 1940
  • 1000
    COMPATIBLE WITH RFC[1000]