Difference between revisions of "Part:BBa K1758324"

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For our copper sensor we used the native operator of cooper homeostasis from <i>E.coli</i> K12. This includes the promoter (CopAP) and its regulator CueR. CueR is a MerR like regulator, which stimulates the transcription of CopA, a P-type ATPase pump (Outten et al. 2000). CopA is the central component in obtaining copper homeostasis, it exports free copper from cytoplasm to the periplasm. This is enable by Copper induced activation of the operon transcription via CueR. The CueR-Cu+ is the DNA-binding transcriptional dual regulator which activates transcription(Yamamoto, Ishihama 2005) To sum it up CueR regulon plays an important role in aerobic copper tolerance in <i>E.coli</i>(Grass, Rensing 2001).In BBa_K1758324 we  combined the codon optimized CueR (<a href="https://parts.igem.org/Part:BBa_K1758320" target="_blank">BBa_K1758320</a>) under the control of a constitutive promoter with strong RBS(<a href="https://parts.igem.org/Part:BBa_K608002" target="_blank">BBa_K608002</a>)with CopAP and sfGFP (<a href="https://parts.igem.org/Part:BBa_K1758321" target="_blank">BBa_K1758321</a>) for measuring output signals. Through the addition of a 5’UTR before the sfGFP we optimized the expression of sfGFP and increased.
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For our copper sensor we used the native operator of cooper homeostasis from <i>E.coli</i> K12. This includes the promoter <i>copAP</i> and its regulator CueR. CueR is a MerR like regulator, which stimulates the transcription of <i>copA</i>, a P-type ATPase pump (Outten et al. 2000). CopA is the central component in obtaining copper homeostasis, it exports free copper from cytoplasm to the periplasm. This is enable by Copper induced activation of the operon transcription via CueR. The CueR-Cu+ is the DNA-binding transcriptional dual regulator which activates transcription(Yamamoto, Ishihama 2005) To sum it up CueR regulon plays an important role in aerobic copper tolerance in <i>E.coli</i>(Grass, Rensing 2001).In BBa_K1758324 we  combined the codon optimized CueR (<a href="https://parts.igem.org/Part:BBa_K1758320" target="_blank">BBa_K1758320</a>) under the control of a constitutive promoter with strong RBS(<a href="https://parts.igem.org/Part:BBa_K608002" target="_blank">BBa_K608002</a>)with CopAP and sfGFP (<a href="https://parts.igem.org/Part:BBa_K1758321" target="_blank">BBa_K1758321</a>) for measuring output signals. Through the addition of a 5’UTR before the sfGFP we optimized the expression of sfGFP and increased.
 
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===Sequence and Features===
 
===Sequence and Features===
 
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Revision as of 06:03, 19 September 2015

Usage and Biology

For our copper sensor we used the native operator of cooper homeostasis from E.coli K12. This includes the promoter copAP and its regulator CueR. CueR is a MerR like regulator, which stimulates the transcription of copA, a P-type ATPase pump (Outten et al. 2000). CopA is the central component in obtaining copper homeostasis, it exports free copper from cytoplasm to the periplasm. This is enable by Copper induced activation of the operon transcription via CueR. The CueR-Cu+ is the DNA-binding transcriptional dual regulator which activates transcription(Yamamoto, Ishihama 2005) To sum it up CueR regulon plays an important role in aerobic copper tolerance in E.coli(Grass, Rensing 2001).In BBa_K1758324 we combined the codon optimized CueR (BBa_K1758320) under the control of a constitutive promoter with strong RBS(BBa_K608002)with CopAP and sfGFP (BBa_K1758321) for measuring output signals. Through the addition of a 5’UTR before the sfGFP we optimized the expression of sfGFP and increased.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 7
    Illegal NheI site found at 30
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 475
    Illegal SapI.rc site found at 625


Results

in vivo

Our sensor for copper detection consists of CueR a MerR like activator and the copper specific promoter copAP. The promoter is regulated by CueR, which binds Cu 2+-ions. We also used a sfGFP downstream the promoter for detection through a fluorescence signal.

For our copper sensor we used the native operator of cooper homeostasis from E.coli K12. We constructed a part(BBa_K1758324) using the basic genetic structur showed in Our biosensors.The operator sequence, which includes the promoter (copAP), is regulated by the activator CueR. In BBa_K1758324 we combined a codon optimized version of cueR (BBa_K1758320) under the control of a constitutive promoter with sfGFP under the control of the corresponding promoter copAP (BBa_K1758321)(figure 2). Through the addition of a 5’UTR before the sfGFP we optimized the expression of sfGFP and increased fluorescence.

Figure 2: The concept of our in vivo copper sensor (BBa_K1758324), which consists of the activator under the control of a constitutive promoter (BBa_K1758320) and the operator and promoter sequence of the copper inducible promoter. An untranslated region in front of the sfGFP, which is used for detection, enhances its expression (BBa_K1758323).
Figure 3: Time course of the induction of a copper biosensor with sfGFP for different copper concentrations in vivo. The data are measured with BioLector and normalized on OD600. Error bars represent the standard deviation of two biological replicates.
Figure 4: Fluorescence levels at three different stages of cultivation. Shown are levels after 60 minutes, 150 minutes and 650 minutes.

We tested our in vivo ccopper sensor with sfGFP as reporter gene, to test the functionality of the system. Moreover we tested different copper concentrations. The kinetic of our sensors response to different copper concentrations is shown in figure 3. The first 10 hours show a strong increase in fluorescence. After that the increase in fluorescence is slower. For better visualization the kinetics of figure 3 are represented as bars in figure 4. A fluorescence level difference for 60 min, 150 min and 650 min is represented.

In vivo we could show that the adding different concentrations of copper has effects on the transcription levels of sfGFP.

The shown data suggest that sensing copper with our device is possible even if the detectable concentrations are higher than the desireble sensitivity limits. Therfore we tested the copper sensor in our in vitro transcription translation approach.

Our sensors were cultivated in the BioLector. Due to the accuracy of this device we could measure our sample in duplicates.

Time course of the induction of a copper biosensor with sfGFP for different copper concentrations in vivo. The data are measured with BioLector and normalized on OD600. Error bars represent the standard deviation of two biological replicates.

In vivo we could show that the adding different concentrations of copper has effects on the transcription levels of sfGFP.

Fluorescence levels at three different stages of cultivation. Shown are levels after 60 minutes, 150 minutes and 650 minutes.

The shown data suggest that sensing copper with our device is possible even if the detectable concentrations are higher than the desireble sensitivity limits. Therfore we tested the copper sensor in our in vitro transcription translation approach.