Difference between revisions of "Part:BBa K1742005"

Latest revision as of 03:09, 19 September 2015

BxBI integrase

Bxb1 is a protein from Mycobateriophage Bxb1’s gp35 gen. Furthermore, a CAT1 intron from Ricinus communis has been added before exon in order to increase the efficiency of the enzyme. Its function is to regulate the lysogenic cycle of the phage by integrating and excising phage’s genome in Mycobacterium smegmatis chromosome [1]. This integrase is able to recognize two different sites, one in phage’s genome (attP, “Phage attachment site”) and another in bacterial chromosome (attB, “Bacterial attachment site”)[2]. Depending on the position and sense of these sites, bxb1 is able of excising or inverting. We used bxb1 as excisionase by flanking a sequence close to the promoter

Biology and Usage

The Nicotiana benthamiana codon-optimized BxBI gene was domesticated and standardized as a GoldenBraid part and cloned into the pUPD2 entry vector. The BxbI integrase gene was then assembled in a multipartite reaction with the strong promoter from the Cauliflower Mosaic Virus (P35S), and its terminator (T35S).

In order to see the activity of the integrase, Valencia_UPV 2015 designed a reporter element (BBa_K1742006) that consists of a Cauliflower Mosaic Virus terminator (T35S) flanked with the recognition sites (attB:T35S:attP:omegaUTR) of BxbI. The CDS was subsequently assembled in a multipartite reaction with the P35S promoter with no ATG, the GFP coding sequence and the T35S terminator. With a binary GoldenBraid assembly step we obtained a multigenic construct (BBa_K1742009) of the previously described transcriptional units. This construct was then transformed, by agroinfiltration, into N. benthamiana plants for testing the expression of GFP.

Figure 1. Expression levels of GFP in N. benthamiana leaves. A) Agrobacterium-mediated transformation with the multigenic construct BBa_K1742009. B) Plant leaf transformed with the PhiC31 reporter element assembled with the promoter, GFP and the terminator.

References
1. Kim, A.I., Ghosh, P., Aaron, MA., Bibb, LA., Jain, S., and Hatfull, GF. (2003). Mycobacteriophage Bxb1 integrates into the Mycobacterium smegmatis groEL1 gene. Molecular Microbiology, 50(2), 463–473
2. Ghosh, P., Pannunzio, NR., Hatfull, GF., and Gottesman, M. (2005). Synapsis in phage Bxb1 integration: Selection mechanism for the correct pair of recombination sites. Journal of Molecular Biology, 349(2), 331–348.

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
COMPATIBLE WITH RFC[12]
21
INCOMPATIBLE WITH RFC[21]
Illegal BglII site found at 1556
Illegal BamHI site found at 738
Illegal XhoI site found at 257
Illegal XhoI site found at 743
23
COMPATIBLE WITH RFC[23]
25
INCOMPATIBLE WITH RFC[25]
Illegal NgoMIV site found at 1057
Illegal NgoMIV site found at 1295
1000
COMPATIBLE WITH RFC[1000]

@@ Line 3: / Line 3: @@
 Bxb1 is a protein from ''Mycobateriophage'' Bxb1’s gp35 gen. Furthermore, a CAT1 intron from ''Ricinus communis'' has been added before exon in order to increase the efficiency of the enzyme. Its function is to regulate the lysogenic cycle of the phage by integrating and excising phage’s genome in ''Mycobacterium smegmatis'' chromosome [1]. This integrase is able to recognize two different sites, one in phage’s genome (attP, “Phage attachment site”) and another in bacterial chromosome (attB, “Bacterial attachment site”)[2]. Depending on the position and sense of these sites, bxb1 is able of excising or inverting. We used bxb1 as excisionase by flanking a sequence close to the promoter
+https://static.igem.org/mediawiki/2015/4/49/Valencia_UPVBxb1_circuit.png
 == Biology and Usage ==
+The ''Nicotiana benthamiana'' codon-optimized BxBI gene was domesticated and standardized as a GoldenBraid part and cloned into the pUPD2 entry vector.  The BxbI integrase gene was then assembled in a multipartite reaction with the strong promoter from the Cauliflower Mosaic Virus (P35S), and its terminator (T35S).
-The plant codon-optimized BxBI gene was domesticated and standardized as a GoldenBraid part and cloned into the pUPD2 entry vector.  The BxbI integrase gene was then assembled in a multipartite reaction with the strong promoter from the Cauliflower Mosaic Virus (P35S), and its terminator (T35S).
 In order to see the activity of the integrase, Valencia_UPV 2015 designed a reporter element ([https://parts.igem.org/Part:BBa_K1742006 BBa_K1742006]) that consists of a Cauliflower Mosaic Virus terminator (T35S) flanked with the recognition sites (attB:T35S:attP:omegaUTR) of BxbI. The CDS was subsequently assembled in a multipartite reaction with the P35S promoter with no ATG, the GFP coding sequence and the T35S terminator.
-With a binary GoldenBraid assembly step we obtained a multigenic construct ([https://parts.igem.org/Part:BBa_K1742009 BBa_K1742009) of the previously described transcriptional units. This construct was then transformed, by agroinfiltration, into N. benthamiana plants for testing the expression of GFP.
+With a binary GoldenBraid assembly step we obtained a multigenic construct ([https://parts.igem.org/Part:BBa_K1742009  BBa_K1742009]) of the previously described transcriptional units. This construct was then transformed, by agroinfiltration, into ''N. benthamiana'' plants for testing the expression of GFP.
 https://static.igem.org/mediawiki/2015/thumb/d/db/ValenciaUPV_bxb1_GFP.png/800px-ValenciaUPV_bxb1_GFP.png