Difference between revisions of "Part:BBa K1807004"

Latest revision as of 01:04, 19 September 2015

Polyphosphate kinase gene from Accumulibacter phosphatis SK-12

This part is a protein generator producing polyphosphate kinase enzyme from Candidatus Accumulibacter phosphatis SK-12.

Usage and Biology

The known Candidatus Accumulibacter phosphatis strains are considered Polyphosphate-Accumulating Organisms (PAOs). They were first discovered in Activated Sludge performing Enhanced Biological Phosphorus Removal in wastewater treatment facilities. Those organisms are capable of accumulating more than two times higher percentage of their dry weight in phosphorus than their non-PAO counterparts. Unfortunately, Accumulibacter has so far proven unculturable which makes it difficult to examine its genetics and biochemistry. However, metagenomic sequences from enriched cultures have been obtained in recent years and this has enabled the production of phylogenetic analysis and mostly-complete genomic sequence assemblies. iGEM York 2015 decided to tap into the PAOs potential and systematically test Accumulibacter phosphate-uptake and storage related enzymes. Rather than attempt to clone the genes from Activated sludge, iGEM York 2015 designed chemically synthesized DNA based on the metagenomic sequence samples available.

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
COMPATIBLE WITH RFC[12]
21
INCOMPATIBLE WITH RFC[21]
Illegal BglII site found at 1063
23
COMPATIBLE WITH RFC[23]
25
INCOMPATIBLE WITH RFC[25]
Illegal AgeI site found at 128
1000
INCOMPATIBLE WITH RFC[1000]
Illegal BsaI site found at 554
Illegal SapI site found at 714

@@ Line 2: / Line 2: @@
 <partinfo>BBa_K1807004 short</partinfo>
-This part is a device producing polyphosphate kinase enzyme from Candidatus Accumulibacter phosphatis SK-12.
+This part is a protein generator producing polyphosphate kinase enzyme from Candidatus ''Accumulibacter phosphatis'' SK-12.
 ===Usage and Biology===
@@ Line 13: / Line 13: @@
-The known Candidatus Accumulibacter phosphatis strains are considered Polyphosphate-Accumulating Organisms (PAOs). They were first discovered in Activated Sludge performing Enhanced Biological Phosphorus Removal in wastewater treatment facilities. Those organisms are capable of accumulating more than two times higher percentage of their dry weight in phosphorus than their non-PAO counterparts. Unfortunately, Accumulibacter has so far proven unculturable which makes it difficult to examine its genetics and biochemistry. However, metagenomic sequences from enriched cultures have been obtained in recent years and this has enabled the production of phylogenetic analysis and mostly-complete genomic sequence assemblies. iGEM York 2015 decided to tap into the PAOs potential and systematically test Accumulibacter phosphate-uptake and storage related enzymes. Rather than attempt to clone the genes from Activated sludge, iGEM York 2015 designed chemically synthesized DNA based on the metagenomic sequence samples available.
+The known Candidatus ''Accumulibacter phosphatis'' strains are considered Polyphosphate-Accumulating Organisms (PAOs). They were first discovered in Activated Sludge performing Enhanced Biological Phosphorus Removal in wastewater treatment facilities. Those organisms are capable of accumulating more than two times higher percentage of their dry weight in phosphorus than their non-PAO counterparts. Unfortunately, ''Accumulibacter'' has so far proven unculturable which makes it difficult to examine its genetics and biochemistry. However, metagenomic sequences from enriched cultures have been obtained in recent years and this has enabled the production of phylogenetic analysis and mostly-complete genomic sequence assemblies. iGEM York 2015 decided to tap into the PAOs potential and systematically test ''Accumulibacter'' phosphate-uptake and storage related enzymes. Rather than attempt to clone the genes from Activated sludge, iGEM York 2015 designed chemically synthesized DNA based on the metagenomic sequence samples available.