Difference between revisions of "Part:BBa K1723006"
E.Cuillery (Talk | contribs) |
|||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
| − | |||
__NOTOC__ | __NOTOC__ | ||
<partinfo>BBa_K1723006 short</partinfo> | <partinfo>BBa_K1723006 short</partinfo> | ||
| + | This part is expressing the sgRNA (single guide RNA) [1] X0 that can form a complex with dCas9-ω (BBa_K1723000). The complex was designed to bind the PAM rich URS J23117Alt promoter (BBa_K1723005) to repress the production of the target gene linked to the promoter. This part is a part of a gene regulation system built with dCas9-ω, in association with those other parts: sgRNA X4 expressing cassette (BBa_K1723007) and gRNA X35 expressing cassette (BBa_K1723008). This sgRNA coding sequence was biobricked with the promoter pBAD and its terminator, both used for our experiments. As the gRNA sequence has to start just after the promoter, the gRNA cannot be put under a promoter using the biobrick assembly system, so we provided a complete expressing cassette but it is still possible to PCR out the part to put it under another promoter. The terminator is specific to sgRNAs and it is recommended to keep it. | ||
| + | <b>This part was experimentally validated, see </b>https://parts.igem.org/Part:BBa_K1723006:Experience | ||
| + | Discover more parts that can work with this one: | ||
| + | |||
| + | http://2015.igem.org/Team:EPF_Lausanne/Part_Collection | ||
| + | |||
| + | https://static.igem.org/mediawiki/2015/8/80/EPF_Lausanne_Z0.png | ||
<!-- Add more about the biology of this part here | <!-- Add more about the biology of this part here | ||
| Line 11: | Line 17: | ||
<!-- --> | <!-- --> | ||
<span class='h3bb'>Sequence and Features</span> | <span class='h3bb'>Sequence and Features</span> | ||
| − | <partinfo> | + | <partinfo>BBa_K1723002 SequenceAndFeatures</partinfo> |
| + | |||
| + | ===References=== | ||
| + | [1] Alec AK Nielsen & Christopher A Voigt (2014). Multi-input CRISPR/Cas circuits that interface host regulatory network. Molecular systems biology, 10(11), 763. | ||
<!-- Uncomment this to enable Functional Parameter display | <!-- Uncomment this to enable Functional Parameter display | ||
===Functional Parameters=== | ===Functional Parameters=== | ||
| − | <partinfo> | + | <partinfo>BBa_K1723002 parameters</partinfo> |
<!-- --> | <!-- --> | ||
Latest revision as of 00:50, 19 September 2015
sgRNA X0 expressing cassette
This part is expressing the sgRNA (single guide RNA) [1] X0 that can form a complex with dCas9-ω (BBa_K1723000). The complex was designed to bind the PAM rich URS J23117Alt promoter (BBa_K1723005) to repress the production of the target gene linked to the promoter. This part is a part of a gene regulation system built with dCas9-ω, in association with those other parts: sgRNA X4 expressing cassette (BBa_K1723007) and gRNA X35 expressing cassette (BBa_K1723008). This sgRNA coding sequence was biobricked with the promoter pBAD and its terminator, both used for our experiments. As the gRNA sequence has to start just after the promoter, the gRNA cannot be put under a promoter using the biobrick assembly system, so we provided a complete expressing cassette but it is still possible to PCR out the part to put it under another promoter. The terminator is specific to sgRNAs and it is recommended to keep it.
This part was experimentally validated, see https://parts.igem.org/Part:BBa_K1723006:Experience
Discover more parts that can work with this one:
http://2015.igem.org/Team:EPF_Lausanne/Part_Collection
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12INCOMPATIBLE WITH RFC[12]Illegal NheI site found at 179
- 21INCOMPATIBLE WITH RFC[21]Illegal BamHI site found at 126
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]
References
[1] Alec AK Nielsen & Christopher A Voigt (2014). Multi-input CRISPR/Cas circuits that interface host regulatory network. Molecular systems biology, 10(11), 763.