Difference between revisions of "Part:BBa K1796001"
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===Functional Parameters===
 
===Functional Parameters===
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<p>Flow cytometry test</p>
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<p>We also tested Pnif expression with flow cytometry. A GFP biobrick part BBa_E0240 was linked downstream of this promoter, then we tested both Pnif sample and a blank control sample simultaneously. The GFP expression by Pnif was clearly shown in the result</p>
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https://static.igem.org/mediawiki/2015/thumb/e/e0/Flow_cytometry_test.jpeg/434px-Flow_cytometry_test.jpeg
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<p>All the data of blank control was shown in the left, and the data of CFP expression was shown in the right.</p>
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https://static.igem.org/mediawiki/2015/thumb/6/62/Flow_cytometry_test2.png/800px-Flow_cytometry_test2.png
 
<p>Relative promoter strength estimates</p>
 
<p>Relative promoter strength estimates</p>
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!Reference
 
!Reference
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<partinfo>BBa_K1796001 parameters</partinfo>
 
<partinfo>BBa_K1796001 parameters</partinfo>
 
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==SCU_China's MEASUREMENT==
 
==SCU_China's MEASUREMENT==
 
https://static.igem.org/mediawiki/2015/thumb/9/98/Comparison_of_Pnif_and_Pd.jpeg/800px-Comparison_of_Pnif_and_Pd.jpeg
 
https://static.igem.org/mediawiki/2015/thumb/9/98/Comparison_of_Pnif_and_Pd.jpeg/800px-Comparison_of_Pnif_and_Pd.jpeg

Revision as of 18:10, 18 September 2015

promoter of Paenibacillus sp. WLY78 nif gene cluster

The promoter of Paenibacillus sp. WLY78 nif gene cluster, We named it Pnif. Pnif is a σ70-dependent promoter located upstream of nifB. Pnif is in control of all the gene clusters of nitrogen fixation genome. Confirmation of nif promoter We standardized the nif promoter of Paenibacillus sp. WLY78, and linked it to the upstream of 3 reporter genes (RFP reporter: BBa_K1357010, YFP reporter: BBa_E0430;amilCP reporter: BBa_K1357009) to confirm the reliability of this promoter. The results are shown in Figure 2. A B C


Confirmation_of_Pnif_AB.png 622px-C-confirmation_of_Pnif.jpeg

Fig.4. Confirmation of nif promoter of Paenibacillus sp. WLY78. (A) Pnif+RFP reporter; (B) Pnif+YFP reporter;(C)Pnif+amilCP reporter.

The results confirmed the reliability of Pnif. The initiation of Pnif does not require inducement. Thus it is a effective constitutive promoter.


Usage and Biology

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Functional Parameters

Flow cytometry test

We also tested Pnif expression with flow cytometry. A GFP biobrick part BBa_E0240 was linked downstream of this promoter, then we tested both Pnif sample and a blank control sample simultaneously. The GFP expression by Pnif was clearly shown in the result

434px-Flow_cytometry_test.jpeg

All the data of blank control was shown in the left, and the data of CFP expression was shown in the right.

800px-Flow_cytometry_test2.png

Relative promoter strength estimates

Reference Strength
BBa_K1796001 13
BBa_K176011 67
typeconstitutive promoter

SCU_China's MEASUREMENT

800px-Comparison_of_Pnif_and_Pd.jpeg