Difference between revisions of "Part:BBa K1604020"
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===Usage and Biology=== | ===Usage and Biology=== | ||
− | This device contains the four genes necessary for βcarotene biosynthesis. <html><a href="#fn:1" id="fnref:1" title="see footnote" class="footnote">[1]</a></html> | + | This device contains the four genes necessary for β-carotene biosynthesis. <html><a href="#fn:1" id="fnref:1" title="see footnote" class="footnote">[1]</a></html> |
− | <div style="text-align:center"><html><img src="https://static.igem.org/mediawiki/parts/ | + | <div style="text-align:center"><html><img src="https://static.igem.org/mediawiki/parts/c/c0/Unitn_pics_2015RetinalPathway.png"style="width:40%;"></img></div></html> |
<p style="width:600px;margin: 20px auto 60px; text-align:justify"><b>FIGURE 1. Biochemical pathway of β-carotene.</b> βcarotene biosynthesis from pharnesyl di phospahate a colorless molecule naturally produced in <i> E. coli</i>.</p> | <p style="width:600px;margin: 20px auto 60px; text-align:justify"><b>FIGURE 1. Biochemical pathway of β-carotene.</b> βcarotene biosynthesis from pharnesyl di phospahate a colorless molecule naturally produced in <i> E. coli</i>.</p> | ||
<div style="text-align:center"><html><img src="https://static.igem.org/mediawiki/parts/a/a7/Unitn_pics_2015_k20pellet.jpg"style="width:50%;"></img></div></html> | <div style="text-align:center"><html><img src="https://static.igem.org/mediawiki/parts/a/a7/Unitn_pics_2015_k20pellet.jpg"style="width:50%;"></img></div></html> | ||
− | <p style="width:600px;margin: 20px auto 60px; text-align:justify"><b>FIGURE 2. Production of β-carotene</b>. NEB10β cells were transformed with BBa_K1604020 and grown up to an OD of 0.6 and induced with 5 mM of arabinose for 24 hours. Cells transformed with BBa_K731201(araC-pBAD) were used as negative control for β-carotene production. BBa_K731201(araC-pBAD) (A), BBa_K1604020 (β-carotene producer) | + | <p style="width:600px;margin: 20px auto 60px; text-align:justify"><b>FIGURE 2. Production of β-carotene</b>. NEB10β cells were transformed with BBa_K1604020 and grown up to an OD of 0.6 and induced with 5 mM of arabinose for 24 hours. Cells transformed with BBa_K731201 (araC-pBAD) were used as negative control for β-carotene production. BBa_K731201 (araC-pBAD) (A), BBa_K1604020 (β-carotene producer) with arabinose 5mM (B), and not induced (C). Also uninduced cells produced high amounts of β carotene.</p> |
<div style="text-align:center"><html><img src="https://static.igem.org/mediawiki/parts/5/5c/Unitn_pics_2015extraction.jpg"style="width:75%;"></img></div></html> | <div style="text-align:center"><html><img src="https://static.igem.org/mediawiki/parts/5/5c/Unitn_pics_2015extraction.jpg"style="width:75%;"></img></div></html> | ||
<p style="width:600px; margin-left:150px; margin-bottom:60px; text-align:justify"> | <p style="width:600px; margin-left:150px; margin-bottom:60px; text-align:justify"> | ||
− | <b>FIGURE 3. Extraction of β-carotene.</b> NEB10β cells were transformed with BBa_K1604020 and grown in 100 mL of LB. The cells were induced with 5 mM of arabinose and for 24 hours. The cells were span down and the supernatant was discarded. The pellets were incubated with 2.5 mL of acetone for 10 min at 50 °C.<html><a href="#fn:2" id="fnref:2" title="see footnote" class="footnote">[2]</a></html> Afterward they were centrifuged to recover the extracted pigments. | + | <b>FIGURE 3. Extraction of β-carotene.</b> NEB10β cells were transformed with BBa_K1604020 and grown in 100 mL of LB. The cells were induced with 5 mM of arabinose and for 24 hours. The cells were span down and the supernatant was discarded. The pellets were incubated with 2.5 mL of acetone for 10 min at 50 °C.<html><a href="#fn:2" id="fnref:2" title="see footnote" class="footnote">[2]</a></html> Afterward they were centrifuged to recover the extracted pigments. On the left extraction in acetone of β-carotene. On the right TLC analysis of β-carotene extract from BBa_K1604020 (β-carotene producer) without arabinose 5mM (A), induced (B); and β-carotene reference (C).</p> |
<div style="text-align:center"><html><img src="https://static.igem.org/mediawiki/parts/0/09/Unitn_pics_graficoUV_k1604020.jpg"style="width:75%;"></img></div></html> | <div style="text-align:center"><html><img src="https://static.igem.org/mediawiki/parts/0/09/Unitn_pics_graficoUV_k1604020.jpg"style="width:75%;"></img></div></html> | ||
<p style="width:600px; margin-left:150px; margin-bottom:60px; text-align:justify"> | <p style="width:600px; margin-left:150px; margin-bottom:60px; text-align:justify"> | ||
− | <b>FIGURE 4. UV-Vis spectra of carotenoids. </b> The pigment were extracted as described in Figure 3. The extracted samples were diluted 1:7 in acetone and the spectra were taken with UV-VIS Agilent. The spectra were acquired between 300 and 800 nm and blanked with acetone. | + | <b>FIGURE 4. UV-Vis spectra of carotenoids. </b> The pigment were extracted as described in Figure 3. The extracted samples were diluted 1:7 in acetone and the spectra were taken with UV-VIS Agilent Cary 8454. The spectra were acquired between 300 and 800 nm and blanked with acetone. UV-Vis spectra: reference β-carotene (green); BBa_K173201, control cells (violet): and BBa_K1604020 (araCpBAD + β-carotene) with 5 mM arabinose (red) and without induction (blue).</p> |
Check out our Wiki <html><a href="http://2015.igem.org/Team:UNITN-Trento">UNITN-Trento iGEM 2015</a>! </html> | Check out our Wiki <html><a href="http://2015.igem.org/Team:UNITN-Trento">UNITN-Trento iGEM 2015</a>! </html> | ||
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<li id="fn:2"> | <li id="fn:2"> | ||
− | <p>http://2009.igem.org/Team:Cambridge/Project/CA03 | + | <p>http://2009.igem.org/Team:Cambridge/Project/CA03</p> |
</li> | </li> | ||
Latest revision as of 17:10, 18 September 2015
araC-pBAD + beta-carotene
This device produces β-carotene under the control of an arabinose promoter.
Usage and Biology
This device contains the four genes necessary for β-carotene biosynthesis. [1]
FIGURE 1. Biochemical pathway of β-carotene. βcarotene biosynthesis from pharnesyl di phospahate a colorless molecule naturally produced in E. coli.
FIGURE 2. Production of β-carotene. NEB10β cells were transformed with BBa_K1604020 and grown up to an OD of 0.6 and induced with 5 mM of arabinose for 24 hours. Cells transformed with BBa_K731201 (araC-pBAD) were used as negative control for β-carotene production. BBa_K731201 (araC-pBAD) (A), BBa_K1604020 (β-carotene producer) with arabinose 5mM (B), and not induced (C). Also uninduced cells produced high amounts of β carotene.
FIGURE 3. Extraction of β-carotene. NEB10β cells were transformed with BBa_K1604020 and grown in 100 mL of LB. The cells were induced with 5 mM of arabinose and for 24 hours. The cells were span down and the supernatant was discarded. The pellets were incubated with 2.5 mL of acetone for 10 min at 50 °C.[2] Afterward they were centrifuged to recover the extracted pigments. On the left extraction in acetone of β-carotene. On the right TLC analysis of β-carotene extract from BBa_K1604020 (β-carotene producer) without arabinose 5mM (A), induced (B); and β-carotene reference (C).
FIGURE 4. UV-Vis spectra of carotenoids. The pigment were extracted as described in Figure 3. The extracted samples were diluted 1:7 in acetone and the spectra were taken with UV-VIS Agilent Cary 8454. The spectra were acquired between 300 and 800 nm and blanked with acetone. UV-Vis spectra: reference β-carotene (green); BBa_K173201, control cells (violet): and BBa_K1604020 (araCpBAD + β-carotene) with 5 mM arabinose (red) and without induction (blue).
Check out our Wiki UNITN-Trento iGEM 2015!
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Yeong-Su Kim, "Biotransformation of carotenoids to retinal by carotenoid 15,15′-oxygenase", Appl Microbiol Biotechnol (2010) 88:807–816
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http://2009.igem.org/Team:Cambridge/Project/CA03
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21INCOMPATIBLE WITH RFC[21]Illegal BamHI site found at 1144
Illegal BamHI site found at 3185 - 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal NgoMIV site found at 2721
Illegal NgoMIV site found at 2851
Illegal AgeI site found at 979
Illegal AgeI site found at 1936 - 1000INCOMPATIBLE WITH RFC[1000]Illegal SapI site found at 961
Sequence and Features