Difference between revisions of "Part:BBa K1603001:Design"

(→‎Design Notes)
(→‎Design Notes)
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Primers for isolation of pSUC2 with overlap to pTEF1 and Suffix from genomic DNA:
 
Primers for isolation of pSUC2 with overlap to pTEF1 and Suffix from genomic DNA:
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FW:ATCTAAGTTTTAATTACAAAATAAATAGATATGTATTATTCTTCAAAACATTCTC
 
FW:ATCTAAGTTTTAATTACAAAATAAATAGATATGTATTATTCTTCAAAACATTCTC

Revision as of 12:14, 18 September 2015


pTEF1-pSUC2


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 167


Design Notes

Added 20 overlapping base pairs between the two gene fragments through PCR with primers with overhangs. This allowed the two promoters to be combined through Gibson assembly. Added Prefix and Suffix through PCR with primers with overhangs.

Primers for isolation of pTEF1 with Prefix and overlap to pSUC2 from genomic DNA:

FW:GCTTCTAGATAGCTTCAAAATGTTTCTACTCCTTTT

RV:TTTGTAATTAAAACTTAGATTAGATTGCTATGCT


Primers for isolation of pSUC2 with overlap to pTEF1 and Suffix from genomic DNA:

FW:ATCTAAGTTTTAATTACAAAATAAATAGATATGTATTATTCTTCAAAACATTCTC

RV:AGCCTGCAGCGGCCGCTACTAGTAATACGTTAGTGAAAAGAAAAGCTTTTTG


The primers were designed to remove the EcoRI site from the insert when constructing the biobrick to reduce the amount of base pairs in the primers. The primers also adds 3 extra protective basepairs to the PstI site in the insert.


The construction of the final biobrick product was initiated by cutting the vector (BBa_J04450) with XbaI, PstI, KnpI and FastAP and the insert with XbaI and PstI.

Source

Genomic sequence from Saccharomyces cerevisiae CEN.PK2

References