Difference between revisions of "Part:BBa K1732006"
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J23100 Promoter (BBa_J23100) with RBS (BBa_B0034), Firefly Luciferase Sequence (BBa_I712019), and B0015 Terminator (BBa_B0015).
 
J23100 Promoter (BBa_J23100) with RBS (BBa_B0034), Firefly Luciferase Sequence (BBa_I712019), and B0015 Terminator (BBa_B0015).
  
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Firefly Luciferase, also known as FLuc, is a luciferase from Photinus pyralis. It is a protein that emits light when reacted with the appropriate substrate luciferin. It is able to act as a report protein when linked to other promoters of proteins. The luminescence generated can also be used to measure the luminescence of standard luminometers and compare it to the measurements by DIY luminometers.
+
Firefly Luciferase, also known as FLuc, is a luciferase from Photinus pyralis. It is a protein that emits light when reacted with the appropriate substrate luciferin. It is able to act as a report protein when linked to other promoters of proteins. The luminescence generated can also be used to measure the luminescence of standard luminometers and compare it to the measurements by DIY luminometers [1].
  
  
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It was expected that Renilla Luciferase was localized in the cell, and the level of light output from the pellet matched that of the overnight culture and was significantly higher than that of the media. This suggested that the luciferase is located intracellularly.
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It was expected that Firefly Luciferase was localized in the cell, and the level of light output from the pellet matched that of the overnight culture and was significantly higher than that of the media. This suggested that the luciferase is located intracellularly.
  
  
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The graph shows the amount of light output produced from varying concentrations of coelenterazine when added to 100uL of Renilla cells grown overnight (5mL LB broth, 5uL Chloramphenicol, single cell colony). 10uL of coelenterazine was added and this volume stayed consistent. The overnight culture was diluted 1/10 with LB broth in order to measure the Klett OD and stay within accurate measurement range. The purpose of this is to see the effect of light output with increasing concentrations of coelenterazine. The goal was to find a concentration that plateau without maxing out the luminometer (TECAN). It was discovered that at a certain concentration, the light output stop increasing because the acidic methanol used to make the stock solution of coelenterazine began to interfere with the enzyme activity. Also, the luciferase is localized within the cell, which hinders the reaction with coelenterazine. This explains why high concentration of coelenterazine produces lower amount of light.
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The graph shows the amount of light output produced from varying concentrations of luciferin when added to 100uL ofFirefly cells grown overnight (5mL LB broth, 5uL Chloramphenicol, single cell colony). 10uL of luciferin was added and this volume stayed consistent. The overnight culture was diluted 1/10 with LB broth in order to measure the Klett OD and stay within accurate measurement range. The purpose of this is to see the effect of light output with increasing concentrations of luciferin. The goal was to find a concentration that plateau without maxing out the luminometer (TECAN). The original stock solution was 30mM, so it cannot be determine at what concentration of luciferin saturates the sample.
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[[File:Machfirefly.jpg]]
 
[[File:Machfirefly.jpg]]
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The two types of competent cells used were Mach and Top10 cells. Mach cells are one of the fastest growing competent strain and Top10 cells also have transformation and cloning efficiency. Both are able to replicate high number of plasmids at stable levels.  
 
The two types of competent cells used were Mach and Top10 cells. Mach cells are one of the fastest growing competent strain and Top10 cells also have transformation and cloning efficiency. Both are able to replicate high number of plasmids at stable levels.  
  
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From the graphs, it can be determined that higher concentrations of coelenterazine allows for a higher light output. However, the decay rate is not as significant as that of PelB Gaussia at higher concentration of coelenterazine. In addition, the plateau level steadies at a higher light output when given higher concentrations of coelenterazine. It is also important to note that the plateau occurs quickly.
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From the graphs, it can be determined that higher concentrations of luciferin allows for a higher light output, but the decay rate is more significant . In addition, the plateau level steadies at a higher light output when given higher concentrations of luciferin. It is also important to note that the plateau occurs quickly and the jump in light output is temporary.
  
  
 
'''References'''
 
'''References'''
  
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[1]What are some of the differences between Renilla luciferase and firefly luciferase? [Fact sheet].
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[1]
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    (n.d.). Retrieved September 14, 2015, from Promega website: http://www.promega.com/resources/
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    pubhub/enotes/what-are-some-of-the-differences-between-renilla-luciferase-and-firefly-luciferase/
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[2]Gonzalez, V. M., Jr. (2007). Synthesis, Luminescence, and Applications of Coelenterazine and its  
 
[2]Gonzalez, V. M., Jr. (2007). Synthesis, Luminescence, and Applications of Coelenterazine and its  
 
     Analogs. University of Illinois Urbana-Champaign.
 
     Analogs. University of Illinois Urbana-Champaign.
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[3]Coelenterazine [Fact sheet]. (n.d.). Retrieved September 14, 2015, from Gold Biotechnology website:
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[3]Green A, McElroy WD (October 1956). "Function of adenosine triphosphate in the activation of luciferin". Arch. Biochem. Biophys.
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    https://www.goldbio.com/product/1012/coelenterazine
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<!-- Add more about the biology of this part here
 
<!-- Add more about the biology of this part here

Revision as of 02:13, 17 September 2015

pSB1C3-J23100-B0034-Firefly-B0015

J23100-B0034-Firefly-B0015

J23100 Promoter (BBa_J23100) with RBS (BBa_B0034), Firefly Luciferase Sequence (BBa_I712019), and B0015 Terminator (BBa_B0015).

Firefly Luciferase, also known as FLuc, is a luciferase from Photinus pyralis. It is a protein that emits light when reacted with the appropriate substrate luciferin. It is able to act as a report protein when linked to other promoters of proteins. The luminescence generated can also be used to measure the luminescence of standard luminometers and compare it to the measurements by DIY luminometers [1].


Bioluminescent Mechanism of Luciferin

Example13.jpg [2]

Firefly Luciferin is found in many Lampyridae species and serves as a substrate for luciferase enzymes. It is responsible for the yellow light emission of fireflies. For this study, Firefly Luciferase interacted with luciferin to determine relative light output and kinetics [3].

In the mechanism, luciferin incorporates ATP and magnesium ions as cofactors. In the presence of oxygen, AMP and carbon dioxide is released, resulting in the emission of a photon [2].

The image above is the bioluminescent mechanism of luciferin.

Before running experiments with Firefly Luciferase, the location of the luciferase in the media was determined by comparing the light output of overnight grown culture of Firefly cells with those of the pellet and the supernatant. The Firefly culture was spun down, and the pellet represented intracellular localization while the supernatant represented extracellular localization.


Location.jpg


It was expected that Firefly Luciferase was localized in the cell, and the level of light output from the pellet matched that of the overnight culture and was significantly higher than that of the media. This suggested that the luciferase is located intracellularly.


FireflyConc.jpg


The graph shows the amount of light output produced from varying concentrations of luciferin when added to 100uL ofFirefly cells grown overnight (5mL LB broth, 5uL Chloramphenicol, single cell colony). 10uL of luciferin was added and this volume stayed consistent. The overnight culture was diluted 1/10 with LB broth in order to measure the Klett OD and stay within accurate measurement range. The purpose of this is to see the effect of light output with increasing concentrations of luciferin. The goal was to find a concentration that plateau without maxing out the luminometer (TECAN). The original stock solution was 30mM, so it cannot be determine at what concentration of luciferin saturates the sample.

Machfirefly.jpg

Top10firefly.jpg


The two types of competent cells used were Mach and Top10 cells. Mach cells are one of the fastest growing competent strain and Top10 cells also have transformation and cloning efficiency. Both are able to replicate high number of plasmids at stable levels.

From the graphs, it can be determined that higher concentrations of luciferin allows for a higher light output, but the decay rate is more significant . In addition, the plateau level steadies at a higher light output when given higher concentrations of luciferin. It is also important to note that the plateau occurs quickly and the jump in light output is temporary.


References

[1] [2]Gonzalez, V. M., Jr. (2007). Synthesis, Luminescence, and Applications of Coelenterazine and its 

    Analogs. University of Illinois Urbana-Champaign.

[3]Green A, McElroy WD (October 1956). "Function of adenosine triphosphate in the activation of luciferin". Arch. Biochem. Biophys.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 7
    Illegal NheI site found at 30
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 465
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 370
    Illegal AgeI site found at 1640
  • 1000
    COMPATIBLE WITH RFC[1000]



Example11.jpg

This sequence was codon optimized to allow maximal amounts of proteins to be created and extracted.

Kenneth.jpg