Difference between revisions of "Part:BBa K1758361"
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<partinfo>BBa_K1758361 short</partinfo>
 
<partinfo>BBa_K1758361 short</partinfo>
  
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gabR encodes a repressor which controls the expression of mRFP1. GabR can be inactivated by γ-aminobutyrate (GABA). This device is consequently a GABA sensor.
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gabR encodes a transcriptional regulator which activates the expression of mRFP1 in the presence of γ-aminobutyrate (GABA). This device is consequently a GABA sensor.
  
  
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<!-- Add more about the biology of this part here -->
 
<!-- Add more about the biology of this part here -->
 
===Usage and Biology===
 
===Usage and Biology===
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This part consists of the gabR gene from Bacillus subtilis with its natural promoter and mRFP1 under control of the gabT promoter. gabR encodes a transcription factor which in vivo activates the expression of the gabTD operon in the presence of  γ-aminobutyric acid (GABA) and pyridoxal 5′-phosphate (PLP). gabT and gabD encode γ-aminobutyrate aminotransferase and succinic semialdehyde dehydrogenase, respectively. These enzymes enable B. subtilis to utilize GABA as a nitrogen and carbon source. GabR also negatively autoregulates its own expression, both in the presence and abscence of GABA.
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More information can be found here:
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*Belitsky, Boris R. (2004): Bacillus subtilis GabR, a protein with DNA-binding and aminotransferase domains, is a PLP-dependent transcriptional regulator. In Journal of molecular biology 340 (4), pp. 655–664. DOI: 10.1016/j.jmb.2004.05.020.
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*Belitsky, Boris R.; Sonenshein, Abraham L. (2002): GabR, a member of a novel protein family, regulates the utilization of γ-aminobutyrate in Bacillus subtilis. In Molecular Microbiology 45 (2), pp. 569–583. DOI: 10.1046/j.1365-2958.2002.03036.x.
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*Wang, Wei; Kreinbring, Cheryl A. et al. (2013): Crystal structure of Bacillus subtilis GabR, an autorepressor and transcriptional activator of gabT. In Proceedings of the National Academy of Sciences of the United States of America 110 (44), pp. 17820–17825. DOI: 10.1073/pnas.1315887110.
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*Uniprot entry on GabR: P94426
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We worked with this part because GABA is structurally related to GHB, a frequently used date rape drug. By enzymatically converting GHB to GABA it would be possible to detect this drug using this device. Our data confirm that mRFP1 expression can be induced by GABA.
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[[File:Bielefeld-CeBiTec_gabR_induction_GABA.png|700px|thumb|center|Induction by GABA.]]
 
[[File:Bielefeld-CeBiTec_gabR_induction_GABA.png|700px|thumb|center|Induction by GABA.]]
  

Revision as of 00:21, 26 August 2015

mRFP1 controlled by the GABA-inducible activator GabR

gabR encodes a transcriptional regulator which activates the expression of mRFP1 in the presence of γ-aminobutyrate (GABA). This device is consequently a GABA sensor.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 1380
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 2130
    Illegal AgeI site found at 2242
  • 1000
    COMPATIBLE WITH RFC[1000]


Usage and Biology

This part consists of the gabR gene from Bacillus subtilis with its natural promoter and mRFP1 under control of the gabT promoter. gabR encodes a transcription factor which in vivo activates the expression of the gabTD operon in the presence of γ-aminobutyric acid (GABA) and pyridoxal 5′-phosphate (PLP). gabT and gabD encode γ-aminobutyrate aminotransferase and succinic semialdehyde dehydrogenase, respectively. These enzymes enable B. subtilis to utilize GABA as a nitrogen and carbon source. GabR also negatively autoregulates its own expression, both in the presence and abscence of GABA.

More information can be found here:

  • Belitsky, Boris R. (2004): Bacillus subtilis GabR, a protein with DNA-binding and aminotransferase domains, is a PLP-dependent transcriptional regulator. In Journal of molecular biology 340 (4), pp. 655–664. DOI: 10.1016/j.jmb.2004.05.020.
  • Belitsky, Boris R.; Sonenshein, Abraham L. (2002): GabR, a member of a novel protein family, regulates the utilization of γ-aminobutyrate in Bacillus subtilis. In Molecular Microbiology 45 (2), pp. 569–583. DOI: 10.1046/j.1365-2958.2002.03036.x.
  • Wang, Wei; Kreinbring, Cheryl A. et al. (2013): Crystal structure of Bacillus subtilis GabR, an autorepressor and transcriptional activator of gabT. In Proceedings of the National Academy of Sciences of the United States of America 110 (44), pp. 17820–17825. DOI: 10.1073/pnas.1315887110.
  • Uniprot entry on GabR: P94426

We worked with this part because GABA is structurally related to GHB, a frequently used date rape drug. By enzymatically converting GHB to GABA it would be possible to detect this drug using this device. Our data confirm that mRFP1 expression can be induced by GABA.


Induction by GABA.