Difference between revisions of "Part:BBa K1638002:Design"
Jpettersen (Talk | contribs) (→Design Notes) |
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===Design Notes=== | ===Design Notes=== | ||
| − | Addition of a protein coding domain to the suffix by Standard Assembly (RFC[10]) creates a scar-site. As the scarsite encodes a stop codon (uacuag), this will leave fused protein coding domain untranslated. | + | Addition of a protein coding domain to the suffix by Standard Assembly (RFC[10]) creates a scar-site. As the scarsite encodes a stop codon (uacuag), this will leave the fused protein coding domain untranslated. |
Instead we recommend the following assembly method: | Instead we recommend the following assembly method: | ||
Revision as of 14:10, 20 July 2015
T25 domain of CyaA from Bordetella pertussis
Assembly Compatibility:
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21INCOMPATIBLE WITH RFC[21]Illegal BamHI site found at 682
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]
Design Notes
Addition of a protein coding domain to the suffix by Standard Assembly (RFC[10]) creates a scar-site. As the scarsite encodes a stop codon (uacuag), this will leave the fused protein coding domain untranslated.
Instead we recommend the following assembly method:
1) Design primers for amplification of the C-terminal fusion protein with BamHI resitriction site included in the forward primer. The primers must also include prefix and suffix.
1.2) Forward primer: 5'-ATATGGATCCNNN...NNN-3'
1.3) Reverse primer: 5'-ATATCTGCAGCGGCCGCTACTAGTANNN..NNN-3'
2) Amplify through PCR with designed primers
3) Digest PCR-product and pSB1C3 with BamHI and PstI.
4) Ligate the two digested product.
Source
asd