Difference between revisions of "Part:BBa K1497017"

 
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<b>Naringenin</b> is the main flavone from grapefruits. In plants, it is synthesized from tyrosine and is one of the central metabolites in the flavone biosynthesis. It is able to reduce the oxidative stress and inhibit some P450 enzymes. One of these cytochrome P450 enzymes is involved in the degradation of caffeine and increase the effect of caffeine after the inhibition with naringenin. The biosynthesis of naringenin is encoded by four genes. The proteins expressed by these genes convert L-tyrosine to the bioactive enantiomer S-naringenin.       
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<b>Naringenin</b> is the main flavone from grapefruits. In plants, it is synthesized from tyrosine and is one of the central metabolites in the flavone biosynthesis. It is able to reduce oxidative stress and inhibit some P450 enzymes. One of these cytochrome P450 enzymes is involved in the degradation of caffeine and increase the effect of caffeine after the inhibition with naringenin. The biosynthesis of naringenin is encoded by four genes. The proteins expressed by these genes convert L-tyrosine to the bioactive enantiomer S-naringenin.       
  
 
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<br><b>Figure 1</b> Reaction Scheme of the naringenin producing operon. The substrate for the reaction is L-tyrosine. The substrate is metabolized to S-naringenin in four steps.</p>
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<br><b>Figure 1</b> Reaction scheme of the naringenin producing operon. The substrate for the reaction is L-tyrosine. The substrate is metabolized to S-naringenin in four steps.</p>
 
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===Usage and Biology===
 
===Usage and Biology===
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<td style="padding: 0cm 5.4pt; width: 336.7pt; height: 214.9pt;"> This part is a composite of four genes each with the strong RBS (<a href="/Part:BBa_B0034">BBa_B0034</a>).
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<td style="padding: 0cm 5.4pt; width: 336.7pt; height: 214.9pt;"> This part is a composite of four genes each with a strong RBS (<a href="/Part:BBa_B0034">BBa_B0034</a>).
 
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   The iGEM Team TU Darmstadt 2014 created the naringenin biosynthesis operon under the control of the T7 promoter <a href="/Part:BBa_ I712074">BBa_I712074</a> and a strong constitutive promoter <a href="/Part:BBa_J23100">BBa_J23100</a>, respectively . They measured the naringenin production after 16 h incubation time with the naringenin biosensor <a href="/Part:BBa_K1497020">BBa_K1497020</a>. <br><br>The cell pellets from E. coli BL21(DE3) – pSB1C3-fdeR-gfp with and without T7-naringenin operon (<a href="/Part:BBa_K1497017">BBa_K1497017</a>) are shown in figure 3. Only in the cell pellet with <a href="/Part:BBa_K1497017">BBa_K1497017</a> GFP fluorescence was detected. <br><br>The Darmstadt team was also able to measure the GFP fluorescence quantitatively and to calculate the production yield of both operons with the help of a calibration curve for the naringenin sensor  (Figure 4). For <a href="/Part:BBa_K1497017">BBa_K1497017</a> 3 µM naringenin were calculated and 1.9 µM naringenin for the operon with the constitutive promoter <a href="/Part:BBa_J23100">BBa_J23100</a> (<a href="/Part:BBa_K1497016">BBa_K1497016</a>).</td>
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   The iGEM Team TU Darmstadt 2014 created the naringenin biosynthesis operon under the control of the T7 promoter <a href="/Part:BBa_ I712074">BBa_I712074</a> and the strong constitutive promoter <a href="/Part:BBa_J23100">BBa_J23100</a>, respectively . They measured the naringenin production after 16 h incubation time with the naringenin biosensor <a href="/Part:BBa_K1497020">BBa_K1497020</a>. <br><br>The cell pellets from E. coli BL21(DE3) – pSB1C3-fdeR-gfp with and without T7-naringenin operon (<a href="/Part:BBa_K1497017">BBa_K1497017</a>) are shown in figure 3. Only in the cell pellet with <a href="/Part:BBa_K1497017">BBa_K1497017</a> GFP fluorescence was detected. <br><br>The Darmstadt team was also able to measure the GFP fluorescence quantitatively and to calculate the production yield of both operons with the help of a calibration curve for the naringenin sensor  (Figure 4). For <a href="/Part:BBa_K1497017">BBa_K1497017</a> 3 µM naringenin were calculated and 1.9 µM naringenin for the operon with the constitutive promoter <a href="/Part:BBa_J23100">BBa_J23100</a> (<a href="/Part:BBa_K1497016">BBa_K1497016</a>).</td>
 
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       <p class="MsoCaption" align="text-align:justify"><span lang="EN-US"><b>Figure 1</b></span></a><span lang="EN-US">
 
       <p class="MsoCaption" align="text-align:justify"><span lang="EN-US"><b>Figure 1</b></span></a><span lang="EN-US">
  Fluorescence of cells with and without the T7-naringenin operon <a href="/Part:BBa_K1497017">BBa_K1497017</a>  from <i>E. coli</i> BL21(DE3)-pSB1C3-<i>fdeR-gfp</i> and J23100-naringenin operon (<a href="/Part:BBa_K1497016">BBa_K1497016</a>) from <i>E. coli</i> Top10-pSB1C3-<i>fdeR-gfp</i>, respectively. <i>E. coli</i> BL21(DE3)-pSB1C3-<i>fdeR-gfp</i> without T7-naringenin operon showed no detectable fluorescence. GFP fluorescence was measurable only in the cells with the functional operon . The estimated yields are 3 µM for part <a href="/Part:BBa_K1497017">(BBa_K1497017)</a> and 1,9 µM for <a href="/Part:BBa_K1497016">BBa_K1497016</a>. <br></span></p>
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  Fluorescence of cells with and without the T7-naringenin operon <a href="/Part:BBa_K1497017">BBa_K1497017</a>  from <i>E. coli</i> BL21(DE3)-pSB1C3-<i>fdeR-gfp</i> and J23100-naringenin operon (<a href="/Part:BBa_K1497016">BBa_K1497016</a>) from <i>E. coli</i> Top10-pSB1C3-<i>fdeR-gfp</i>, respectively. <i>E. coli</i> BL21(DE3)-pSB1C3-<i>fdeR-gfp</i> without T7-naringenin operon showed no detectable fluorescence. GFP fluorescence was measurable only in the cells with the functional operon . The estimated yields are 3 µM for part <a href="/Part:BBa_K1497017">BBa_K1497017</a> and 1,9 µM for <a href="/Part:BBa_K1497016">BBa_K1497016</a>. <br></span></p>
 
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Latest revision as of 14:13, 25 October 2014

Naringenin producing operon under the T7 promoter BBa_I712074

Naringenin is the main flavone from grapefruits. In plants, it is synthesized from tyrosine and is one of the central metabolites in the flavone biosynthesis. It is able to reduce oxidative stress and inhibit some P450 enzymes. One of these cytochrome P450 enzymes is involved in the degradation of caffeine and increase the effect of caffeine after the inhibition with naringenin. The biosynthesis of naringenin is encoded by four genes. The proteins expressed by these genes convert L-tyrosine to the bioactive enantiomer S-naringenin.


Figure 1 Reaction scheme of the naringenin producing operon. The substrate for the reaction is L-tyrosine. The substrate is metabolized to S-naringenin in four steps.



Usage and Biology

This part is a composite of four genes each with a strong RBS (BBa_B0034).


Together, these genes define the naringenin biosynthesis operon without a promotor. In addition of a promotor part the device is able to produce S-naringenin. This device is working in E. coli K and B strains.

iGEM TU Darmstadt 2014 :)

Figure 2 Genetic map of the naringenin operon with T7 promoter (BBa_K1497017). This device produces naringenin in E. coli BL21(DE3) in presence of the inductor IPTG .

Functional Parameters


The iGEM Team TU Darmstadt 2014 created the naringenin biosynthesis operon under the control of the T7 promoter BBa_I712074 and the strong constitutive promoter BBa_J23100, respectively . They measured the naringenin production after 16 h incubation time with the naringenin biosensor BBa_K1497020.

The cell pellets from E. coli BL21(DE3) – pSB1C3-fdeR-gfp with and without T7-naringenin operon (BBa_K1497017) are shown in figure 3. Only in the cell pellet with BBa_K1497017 GFP fluorescence was detected.

The Darmstadt team was also able to measure the GFP fluorescence quantitatively and to calculate the production yield of both operons with the help of a calibration curve for the naringenin sensor (Figure 4). For BBa_K1497017 3 µM naringenin were calculated and 1.9 µM naringenin for the operon with the constitutive promoter BBa_J23100 (BBa_K1497016).
iGEM TU Darmstadt 2014 :)

Figure 2 Cell pellets with and without T7-Naringenin operon from E. coli BL21(DE3)-pSB1C3-fdeR-gfp. The pellet containing the naringenin operon shows a GFP fluorescence under ultraviolet light.

Figure 1 Fluorescence of cells with and without the T7-naringenin operon BBa_K1497017 from E. coli BL21(DE3)-pSB1C3-fdeR-gfp and J23100-naringenin operon (BBa_K1497016) from E. coli Top10-pSB1C3-fdeR-gfp, respectively. E. coli BL21(DE3)-pSB1C3-fdeR-gfp without T7-naringenin operon showed no detectable fluorescence. GFP fluorescence was measurable only in the cells with the functional operon . The estimated yields are 3 µM for part BBa_K1497017 and 1,9 µM for BBa_K1497016.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 1158
    Illegal NheI site found at 4685
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 1725
    Illegal BglII site found at 4694
    Illegal XhoI site found at 3692
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 1831
    Illegal NgoMIV site found at 2663
    Illegal NgoMIV site found at 4665
    Illegal NgoMIV site found at 5241
    Illegal AgeI site found at 1926
    Illegal AgeI site found at 2092
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 3121
    Illegal BsaI site found at 4614
    Illegal BsaI.rc site found at 1357
    Illegal BsaI.rc site found at 4096


References

1. Fuhr UWE, Klittich K, Staib AH (1993) Inhibitory effect of grapefruit juice and its bitter principal , naringenin , on CYP1A2 dependent metabolism of caffeine in. Br J clin Pharmac 35:431–436.

2. Siedler S, Stahlhut SG, Malla S, et al. (2014) Novel biosensors based on flavonoid-responsive transcriptional regulators introduced into Escherichia coli. Metabolic engineering 21:2–8. doi: 10.1016/j.ymben.2013.10.011

3. Yamaguchi T, Kurosaki F, Suh D, et al. (1999) Cross-reaction of chalcone synthase and stilbene synthase overexpressed in Escherichia coli. 460:457–461.

4. Jez JM, Bowman ME, Richard A, Noel JP (2000) letters Structure and mechanism of the evolutionarily unique plant enzyme chalcone isomerase. 7: