Difference between revisions of "Part:BBa K1321336:Experience"

(→‎Applications of BBa_K1321336)
(→‎Applications of BBa_K1321336)
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===Applications of BBa_K1321336===
 
===Applications of BBa_K1321336===
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BBa_K1321336 was characterised both on its own and in conjunction to an additional pLAC-inducible expression system containing AcsC and AcsD (derived from BBa_K1321335) cloned into a medium-to-low copy number plasmid, pSB3K3. The functions of AcsC and AcsD are yet not very well known but are believed to play a crucial role in cellulose crystallisation and secretion into the extracellular space.
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In the presence of AcsC and AcsD, cellulose production was assayed by plating transformed cells on Congo Red assay plates containing 20uM CR, 0.5mM IPTG, 0.1% Arabinose, 1% Glucose, 25ug/ml Chloramphenicol and 25ug/ml Kanamycin. Cellulose-producing E.coli colonies turned red in the presence of CR.
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[[File:YEAH3.jpg|200px|thumb|left|Figure 1 - Congo Red assay, positive colonies]][[File:YEAH2.jpg|200px|thumb|left|Figure 2 - Congo Red assay, negative control]]
 
[[File:YEAH3.jpg|200px|thumb|left|Figure 1 - Congo Red assay, positive colonies]][[File:YEAH2.jpg|200px|thumb|left|Figure 2 - Congo Red assay, negative control]]
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<p>Whilst the AcsC and AcsD elements of the cellulose synthesis operon (coded in part BBa_K1321335) are needed for cellulose release, we were also interested in exploring whether AcsAB only would be enough to produce the polymer in E.coli. The functionality of part BBa_K1321336 was assayed by inducing the system with 0.1% Arabinose in 5mL LB supplied with 1% Glucose and Chloramphenicol. Overnight incubations were set up at 30 °C and 37 °C, and both empty vector controls and un-induced controls were also assayed for cellulose production.
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[[File:LBfraction.png|700px|thumb|left|Figure 3 - Assaying Congo Red (CR) binding by measuring the changes in absorbance at 490nm]]
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During sonication, LB, soluble and non-soluble fractions were produced and kept for further analysis. Congo Red (CR) at a concentration of 20uM was added to all samples, which were then incubated for 2 hours at room temperature and static conditions, prior to absorbance measurements being taken at 490nm. By subtracting the absorbance values of the samples from the absorbance value of a PBS+CR control, it is possible to qualitatively assay the shift in spectral properties of the diazo dye, driven by CR binding to the cellulose fibres.
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[[File:Membranefraction.png|700px|thumb|right|Figure 4 - Assaying Congo Red (CR) binding by measuring the changes in absorbance at 490nm]]
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Because AcsC and AcsD were absent, the LB and soluble fractions derived from sonication were expected to contain no cellulose; the main reason being due to the inability of the cells to extrude the fibers, in addition to cellulose being highly hydrophobic hence should precipitate together with the remaining immiscible cellular elements released during sonication. As predicted, no spectral changes were reported in the LB (figure 3) and soluble fractions (data not shown), however these were observed on non-soluble samples (figure 4) derived from cultures grown at 30 degrees and static conditions (figure 2). These results, supported with two biological repeats and technical triplicates, suggest that BBa_K1321336 is functional and able to produce some cellulose at 30 degrees, in the absence of AcsC and AcsD.
  
 
===User Reviews===
 
===User Reviews===

Revision as of 17:14, 24 October 2014


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Applications of BBa_K1321336

BBa_K1321336 was characterised both on its own and in conjunction to an additional pLAC-inducible expression system containing AcsC and AcsD (derived from BBa_K1321335) cloned into a medium-to-low copy number plasmid, pSB3K3. The functions of AcsC and AcsD are yet not very well known but are believed to play a crucial role in cellulose crystallisation and secretion into the extracellular space.

In the presence of AcsC and AcsD, cellulose production was assayed by plating transformed cells on Congo Red assay plates containing 20uM CR, 0.5mM IPTG, 0.1% Arabinose, 1% Glucose, 25ug/ml Chloramphenicol and 25ug/ml Kanamycin. Cellulose-producing E.coli colonies turned red in the presence of CR.

Figure 1 - Congo Red assay, positive colonies
Figure 2 - Congo Red assay, negative control


Whilst the AcsC and AcsD elements of the cellulose synthesis operon (coded in part BBa_K1321335) are needed for cellulose release, we were also interested in exploring whether AcsAB only would be enough to produce the polymer in E.coli. The functionality of part BBa_K1321336 was assayed by inducing the system with 0.1% Arabinose in 5mL LB supplied with 1% Glucose and Chloramphenicol. Overnight incubations were set up at 30 °C and 37 °C, and both empty vector controls and un-induced controls were also assayed for cellulose production.

Figure 3 - Assaying Congo Red (CR) binding by measuring the changes in absorbance at 490nm

During sonication, LB, soluble and non-soluble fractions were produced and kept for further analysis. Congo Red (CR) at a concentration of 20uM was added to all samples, which were then incubated for 2 hours at room temperature and static conditions, prior to absorbance measurements being taken at 490nm. By subtracting the absorbance values of the samples from the absorbance value of a PBS+CR control, it is possible to qualitatively assay the shift in spectral properties of the diazo dye, driven by CR binding to the cellulose fibres.

Figure 4 - Assaying Congo Red (CR) binding by measuring the changes in absorbance at 490nm

Because AcsC and AcsD were absent, the LB and soluble fractions derived from sonication were expected to contain no cellulose; the main reason being due to the inability of the cells to extrude the fibers, in addition to cellulose being highly hydrophobic hence should precipitate together with the remaining immiscible cellular elements released during sonication. As predicted, no spectral changes were reported in the LB (figure 3) and soluble fractions (data not shown), however these were observed on non-soluble samples (figure 4) derived from cultures grown at 30 degrees and static conditions (figure 2). These results, supported with two biological repeats and technical triplicates, suggest that BBa_K1321336 is functional and able to produce some cellulose at 30 degrees, in the absence of AcsC and AcsD.

User Reviews

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