Difference between revisions of "Part:BBa K1412614:Experience"
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| − | ===Verification=== | + | ==='''Verification'''==== |
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horizontal rotators at 200rpm for 3 hours. | horizontal rotators at 200rpm for 3 hours. | ||
| − | ===Culture=== | + | |
| + | ==='''Culture'''=== | ||
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| − | ===Measurement=== | + | ==='''Measurement'''=== |
What we need is just a ruler!!! | What we need is just a ruler!!! | ||
| − | Use a ruler to measure the diameter of colony from the bottom of the semi-solid medium. The initial colony radius is recorded as R1, and the | + | Use a ruler to measure the diameter of colony from the bottom of the semi-solid medium. The initial colony radius is recorded as R1, and |
| + | |||
| + | the radius are measured at 12h, 24h, 30h, 36h, 42h... as R2, R3, R4, R5, R6, R7…and record time and diameter. The migration radius caused | ||
| − | radius | + | by chemotaxis grows higher over time, larger radius bringing less error. Each radius minus R1 is the net migration. Finally processing data |
| − | + | with excel. | |
| − | |||
==='''Results'''=== | ==='''Results'''=== | ||
| Line 57: | Line 59: | ||
Actually, we processing data and set the diameter of the colony with promoter Lac as 1.0. We got the following table (Figure 3). The ratio | Actually, we processing data and set the diameter of the colony with promoter Lac as 1.0. We got the following table (Figure 3). The ratio | ||
| − | between each colony diameters was fixed after 36 hours. If we set the fixed ratio as relative promoter activities, from our | + | between each colony diameters was fixed after 36 hours. If we set the fixed ratio as relative promoter activities, from our |
| − | promoter TetR (BBa_R0040) activity is 1.86 relative to promoter Lac (BBa_R0010). Refer to published papers [1] [2], | + | characterization, promoter TetR (BBa_R0040) activity is 1.86 relative to promoter Lac (BBa_R0010). Refer to published papers [1] [2], |
| − | pTetR and pLac has already been measured, and their ratio (pTetR/pLac) is 1.58. So our system is reliable as it | + | promoter activity between pTetR and pLac has already been measured, and their ratio (pTetR/pLac) is 1.58. So our system is reliable as it |
| − | between different promoter activities. However, no published data tell us about the relative promoter activity of | + | could tell the difference between different promoter activities. However, no published data tell us about the relative promoter activity of |
| − | L-arabinose can induce pBAD (BBa_K206000). The characterization of the relative activity of pBAD is carried out | + | pBAD (BBa_K206000), while L-arabinose can induce pBAD (BBa_K206000). The characterization of the relative activity of pBAD is carried out |
| − | arabinose in culture. And the ratio (pBAD/pLac) is 0.37. | + | with 0.02% inducer L-arabinose in culture. And the ratio (pBAD/pLac) is 0.37. |
===Applications of BBa_K1412614=== | ===Applications of BBa_K1412614=== | ||
Revision as of 18:28, 16 October 2014
This experience page is provided so that any user may enter their experience using this part.
Please enter
how you used this part and how it worked out.
Protocol
Verification=
Activiation
Transfer 50 μL bacterium solution (pLac-RBS (1.0)-CheZ-TT, pLac-RBS (0.01)-CheZ-TT, pLac-RBS (0.3)-CheZ-TT) into 5 ml new LB liquid medium
whose chloromycetin concentration is 50ug/ml to culture for 12 hours in 37℃ horizontal rotators at 200 rpm.Then transfer another 50μL
bacterium solution from the LB above to another new 5ml LB liquid medium whose chloromycetin concentration is 50ug/ml to culture in 37℃
horizontal rotators at 200rpm for 3 hours.
Culture
We draw three dots on a plate before, then stab 3μl bacterium medium into the M63 semisolid medium at the dots.
After that, culture the bacteria in constant temperature and humidity incubator at 37℃.
Measurement
What we need is just a ruler!!!
Use a ruler to measure the diameter of colony from the bottom of the semi-solid medium. The initial colony radius is recorded as R1, and
the radius are measured at 12h, 24h, 30h, 36h, 42h... as R2, R3, R4, R5, R6, R7…and record time and diameter. The migration radius caused
by chemotaxis grows higher over time, larger radius bringing less error. Each radius minus R1 is the net migration. Finally processing data
with excel.
Results
Actually, we processing data and set the diameter of the colony with promoter Lac as 1.0. We got the following table (Figure 3). The ratio
between each colony diameters was fixed after 36 hours. If we set the fixed ratio as relative promoter activities, from our
characterization, promoter TetR (BBa_R0040) activity is 1.86 relative to promoter Lac (BBa_R0010). Refer to published papers [1] [2],
promoter activity between pTetR and pLac has already been measured, and their ratio (pTetR/pLac) is 1.58. So our system is reliable as it
could tell the difference between different promoter activities. However, no published data tell us about the relative promoter activity of
pBAD (BBa_K206000), while L-arabinose can induce pBAD (BBa_K206000). The characterization of the relative activity of pBAD is carried out
with 0.02% inducer L-arabinose in culture. And the ratio (pBAD/pLac) is 0.37.
Applications of BBa_K1412614
User Reviews
UNIQbb92a85b519c0844-partinfo-00000000-QINU UNIQbb92a85b519c0844-partinfo-00000001-QINU