Difference between revisions of "Part:BBa K1412006"
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<partinfo>BBa_K1412006 short</partinfo> | <partinfo>BBa_K1412006 short</partinfo> | ||
− | This part is a derivative of [https://parts.igem.org/Part:BBa_K1412005 BBa_K1412005 ] but weaker than it. It consists of a CheZ coding region and a RBS coding region whose relative efficiency is 0. | + | This part is a derivative of [https://parts.igem.org/Part:BBa_K1412005 BBa_K1412005 ] but weaker than it. It consists of a <i>CheZ</i> coding region and a RBS coding region whose relative efficiency is 0.01. This part does not pose any biological threat. With a promoter of your interest, this device rescues the mobility of <i>CheZ</i>-/- cells. It has been reported that <i>CheZ</i>-/- strain has a higher frequency of direction change and thus a narrower range of mobility. |
=='''Usage'''== | =='''Usage'''== | ||
− | 1.We performed a swarming assay to characterize the motility of ''CheZ''-deficient strain | + | 1. We performed a swarming assay to characterize the motility of ''<i>CheZ</i>''-deficient strain <i>CL-1</i> and cells transformed with ''<i>CheZ</i>''-expressing plasmid [https://parts.igem.org/Part:BBa_K1412001 BBa_K1412001 ]. |
− | Our results clearly show that ''CheZ''-deficient mutants show smaller diffusion, while they are rescued by our [https://parts.igem.org/Part:BBa_K1412001 BBa_K1412001] plasmid. | + | Our results clearly show that ''<i>CheZ</i>''-deficient mutants show smaller diffusion, while they are rescued by our [https://parts.igem.org/Part:BBa_K1412001 BBa_K1412001] plasmid. |
− | 2.We also performed a swarming assay to characterize the strength of RBS with | + | 2. We also performed a swarming assay to characterize the strength of RBS with <i>CL-1</i> cells. Three strains of <i>CL-1</i> are transformed with ''<i>CheZ</i>''-expressing plasmid of different RBS efficiency ([https://parts.igem.org/Part:BBa_B0034 BBa_B0034 ]:1.0 ; [https://parts.igem.org/Part:BBa_B0032 BBa_B0032 ]:0.01; [https://parts.igem.org/Part:BBa_B0033 BBa_B0033 ]:0.01 ). |
− | Changing different RBS in the same circuit, we can characterize the efficiency of RBS, since the expression strength of ''CheZ'' is positively associated with the efficiency of RBS. | + | Changing different RBS in the same circuit, we can characterize the efficiency of RBS, since the expression strength of ''<i>CheZ</i>'' is positively associated with the efficiency of RBS. |
=='''Experimental data''' == | =='''Experimental data''' == | ||
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[1] [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0011915#pone-0011915-g006 Paungfoo-Lonhienne C et al. (2010) Turning the table: plants consume microbes as a source of nutrients. PLoS One 5(7): e11915 ]. | [1] [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0011915#pone-0011915-g006 Paungfoo-Lonhienne C et al. (2010) Turning the table: plants consume microbes as a source of nutrients. PLoS One 5(7): e11915 ]. | ||
− | [2] [http://pubs.acs.org/doi/abs/10.1021/bi00561a015 Chelsky D and Dahlquist FW (1980) Chemotaxis in Escherichia | + | [2] [http://pubs.acs.org/doi/abs/10.1021/bi00561a015 Chelsky D and Dahlquist FW (1980) Chemotaxis in Escherichia]. |
+ | ---- | ||
+ | |||
+ | <I><B>More information, click here: [http://2014.igem.org/Team:XMU-China# XMU-China] |
Latest revision as of 18:01, 14 October 2014
RBS (0.01) CheZ double terminators -- derivative of BBa_K1412005
This part is a derivative of BBa_K1412005 but weaker than it. It consists of a CheZ coding region and a RBS coding region whose relative efficiency is 0.01. This part does not pose any biological threat. With a promoter of your interest, this device rescues the mobility of CheZ-/- cells. It has been reported that CheZ-/- strain has a higher frequency of direction change and thus a narrower range of mobility.
Usage
1. We performed a swarming assay to characterize the motility of CheZ-deficient strain CL-1 and cells transformed with CheZ-expressing plasmid BBa_K1412001 .
Our results clearly show that CheZ-deficient mutants show smaller diffusion, while they are rescued by our BBa_K1412001 plasmid.
2. We also performed a swarming assay to characterize the strength of RBS with CL-1 cells. Three strains of CL-1 are transformed with CheZ-expressing plasmid of different RBS efficiency (BBa_B0034 :1.0 ; BBa_B0032 :0.01; BBa_B0033 :0.01 ).
Changing different RBS in the same circuit, we can characterize the efficiency of RBS, since the expression strength of CheZ is positively associated with the efficiency of RBS.
Experimental data
![IMG 20140825 185642.jpg](/wiki/images/3/3e/IMG_20140825_185642.jpg)
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]
Reference
[1] [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0011915#pone-0011915-g006 Paungfoo-Lonhienne C et al. (2010) Turning the table: plants consume microbes as a source of nutrients. PLoS One 5(7): e11915 ].
[2] [http://pubs.acs.org/doi/abs/10.1021/bi00561a015 Chelsky D and Dahlquist FW (1980) Chemotaxis in Escherichia].
More information, click here: [http://2014.igem.org/Team:XMU-China# XMU-China]