Difference between revisions of "Part:BBa K1465202:Design"

 
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===Design Notes===
 
===Design Notes===
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ha
 
  
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*Amplification of the pSB1C3-Backbone (<bbpart>BBa_J04450</bbpart>) using the specific Gibson-Primer [http://2014.igem.org/Team:Bielefeld-CeBiTec/Notebook/Primer#pSB1C3_pre_ccbLS pSB1C3_pre_ccbLS] and [http://2014.igem.org/Team:Bielefeld-CeBiTec/Notebook/Primer#pSB1C3_suf_ccbLS pSB1C3_suf_ccbLS]:<br>
  
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'''pSB1C3_pre_ccbLS (44 bp)'''<br>
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5'-CATCTAGCGGCCGCTACTAGTATTAGATCTATTTCTCCTCTTTCTCTAGAAGCGGCCGCGAATTCC-3'<br>
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'''pSB1C3_suf_ccbLS (43 bp)'''<br>
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5'-TGGTTTACCGCGGCAACTAATACTAGTAGCGGCCGCTGCAGTC-3'<br>
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*[http://2014.igem.org/Team:Bielefeld-CeBiTec/Notebook/Protocols#Gibson Gibson-Assembly] of the pSB1C3-Backbone and the gBlock containing the optimized coding sequence of the Ribulose-1,5-bisphosphate carboxylase/oxygenase (''ccbLS'') from ''Halothiobacillus neapolitanus''.<br>
  
 
===Source===
 
===Source===
  
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PCR-Amplifikation using the primer
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Gensynthesis ([http://eu.idtdna.com/pages/products/genes/gblocks-gene-fragments gBlocks]) of the codon optimized sequence for ''Escherchia coli'' by using the [http://www.jcat.de/ Codon Adaptation Tool] and the [http://eu.idtdna.com/CodonOpt Codon Optimization from IDT]:
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BILD
  
 
===References===
 
===References===

Latest revision as of 17:37, 3 October 2014


Ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO) from Halothiobacillus neapolitanus


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 1366
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 809
    Illegal BamHI site found at 1490
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

  • Amplification of the pSB1C3-Backbone (BBa_J04450) using the specific Gibson-Primer [http://2014.igem.org/Team:Bielefeld-CeBiTec/Notebook/Primer#pSB1C3_pre_ccbLS pSB1C3_pre_ccbLS] and [http://2014.igem.org/Team:Bielefeld-CeBiTec/Notebook/Primer#pSB1C3_suf_ccbLS pSB1C3_suf_ccbLS]:
pSB1C3_pre_ccbLS (44 bp)

5'-CATCTAGCGGCCGCTACTAGTATTAGATCTATTTCTCCTCTTTCTCTAGAAGCGGCCGCGAATTCC-3'

pSB1C3_suf_ccbLS (43 bp)

5'-TGGTTTACCGCGGCAACTAATACTAGTAGCGGCCGCTGCAGTC-3'
  • [http://2014.igem.org/Team:Bielefeld-CeBiTec/Notebook/Protocols#Gibson Gibson-Assembly] of the pSB1C3-Backbone and the gBlock containing the optimized coding sequence of the Ribulose-1,5-bisphosphate carboxylase/oxygenase (ccbLS) from Halothiobacillus neapolitanus.

Source

Gensynthesis ([http://eu.idtdna.com/pages/products/genes/gblocks-gene-fragments gBlocks]) of the codon optimized sequence for Escherchia coli by using the [http://www.jcat.de/ Codon Adaptation Tool] and the [http://eu.idtdna.com/CodonOpt Codon Optimization from IDT]:


BILD

References