Difference between revisions of "Part:BBa K1429002"

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IP free cyan fluorescent protein.  We have a ribosome binding site (RBS).
 
IP free cyan fluorescent protein.  We have a ribosome binding site (RBS).
  
Background
 
  
Making sure the inserts are here from the colony PCR results - are the GFP and RFP inserts present?
+
<table style="width: 500px;">
 +
<tbody>
 +
<tr>
 +
<td><strong>Component</strong></td>
 +
<td><strong>Using purified digest product</strong></td>
 +
<td><strong>Using unpurified digest product</strong></td>
 +
<td><strong>BB alone</strong></td>
 +
</tr>
 +
<tr>
 +
<td>dH2O</td>
 +
<td>x</td>
 +
<td>11</td>
 +
<td>14</td>
 +
</tr>
 +
<tr>
 +
<td>Insert (RFP or GFP)</td>
 +
<td>14</td>
 +
<td>3</td>
 +
<td>x</td>
 +
</tr>
 +
<tr>
 +
<td>1:10 BB</td>
 +
<td>3</td>
 +
<td>3</td>
 +
<td>3</td>
 +
</tr>
 +
<tr>
 +
<td>T4 buffer (10</td>
 +
<td>1</td>
 +
<td>1</td>
 +
<td>1</td>
 +
</tr>
 +
<tr>
 +
<td>&nbsp;</td>
 +
<td>&nbsp;</td>
 +
<td>&nbsp;</td>
 +
<td>&nbsp;</td>
 +
</tr>
 +
</tbody>
 +
</table>
  
 
 
Digest each plasmid with EcoRI/PstI. Incubate 15' at 37C.
 
 
 
 
Run entire digest on 0.8% gel.
 
 
 
Results
 
 
These were slightly confounding. What I *think* happened is that the buffer wasn't optimal for one of the enzymes, so the digest wasn't run to completion. Why do I think this?
 
  
 
<!-- Add more about the biology of this part here
 
<!-- Add more about the biology of this part here

Revision as of 01:35, 1 October 2014

Cyan Fluorescent Protein (CFP) "Cindy Lou" coding region, intellectual property-free

IP free cyan fluorescent protein. We have a ribosome binding site (RBS).


<tbody> </tbody>
Component Using purified digest product Using unpurified digest product BB alone
dH2O x 11 14
Insert (RFP or GFP) 14 3 x
1:10 BB 3 3 3
T4 buffer (10 1 1 1
       


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal XhoI site found at 74
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 2