Difference between revisions of "Part:BBa K1065302:Design"

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<partinfo>BBa_K1065302 short</partinfo>
 
<partinfo>BBa_K1065302 short</partinfo>
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===Design Notes===
 
===Design Notes===
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This part has been created first by inserting the RBS sequence between pFixK2 and amilGFP (in Bba_K952003) through mutagenesis PCR  with a specific primer. <br>Furthermore we decided to regulate transcription with an upstream promoter, pLac (BBa_R0010).
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Part <partinfo>Bba_k952003</partinfo> was missing an RBS before the amilGFP CDS. We inserted the RBS by mutagenesis, and created the part <partinfo>Bba_k1065305</partinfo>. Then we added a pLAC promoter (R0010) in front of the device and characterized it.
  
 
===Source===
 
===Source===
  
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The part consist of: <BR>
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The part consists of: <BR>
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<partinfo>Bba_K1065305</partinfo>: the entire blue light sensing device with fluorescent output.<BR>
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<partinfo>BBa_R0010</partinfo>: pLac promoter (LacI regulated).
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RBS sequence
  
 
===References===
 
===References===
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<html><ol>
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<li>Alieva, N. O., et al. 2008. Diversity and evolution of coral fluorescent proteins. PLoS One 3:e2680.</li>
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<li>Moglich A, Ayers RA and Moffat K. (2009) Design and Signaling Mechanism of Light-Regulated Histidine Kinases. J. Mol. Bio. 385, 5, 1433-1444.</li>
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<li>Ohlendorf, R., Vidavski, R.R., Eldar, A., Moffat, K. & Möglich, A.(2012). From Dusk till Dawn: One-Plasmid Systems for Light-Regulated Gene Expression. J. Mol. Biol., 416: 534: 542</li>
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</ol></html>

Latest revision as of 14:07, 28 October 2013

Blue light sensing device without inverter for the production of amilGFP


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 770
    Illegal NgoMIV site found at 842
    Illegal NgoMIV site found at 932
    Illegal NgoMIV site found at 950
    Illegal NgoMIV site found at 1462
    Illegal NgoMIV site found at 1755
    Illegal NgoMIV site found at 1849
    Illegal AgeI site found at 484
    Illegal AgeI site found at 1630
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 1519
    Illegal BsaI.rc site found at 383


Design Notes

Part BBa_K952003 was missing an RBS before the amilGFP CDS. We inserted the RBS by mutagenesis, and created the part BBa_K1065305. Then we added a pLAC promoter (R0010) in front of the device and characterized it.

Source

The part consists of:
BBa_K1065305: the entire blue light sensing device with fluorescent output.
BBa_R0010: pLac promoter (LacI regulated). RBS sequence

References

  1. Alieva, N. O., et al. 2008. Diversity and evolution of coral fluorescent proteins. PLoS One 3:e2680.
  2. Moglich A, Ayers RA and Moffat K. (2009) Design and Signaling Mechanism of Light-Regulated Histidine Kinases. J. Mol. Bio. 385, 5, 1433-1444.
  3. Ohlendorf, R., Vidavski, R.R., Eldar, A., Moffat, K. & Möglich, A.(2012). From Dusk till Dawn: One-Plasmid Systems for Light-Regulated Gene Expression. J. Mol. Biol., 416: 534: 542