Difference between revisions of "Part:BBa K1045016:Design"

(→‎Source)
(→‎Design Notes)
 
(6 intermediate revisions by the same user not shown)
Line 6: Line 6:
  
 
===Design Notes===
 
===Design Notes===
−
The inverse DarR sequence was cut out from [[Part:BBa_K1045001|BBa_K1045001]] and ligated into [[Part:BBa_K1045009|BBa_K1045009]] in a post-fixing composition.
+
The inverse DarR sequence was cut out from [[Part:BBa_K1045001|BBa_K1045001]] and ligated in a post-fixing composition into the plasmid carrying [[Part:BBa_K1045009|BBa_K1045009]].
  
 
===Source===
 
===Source===
  
−
For this composite part, part [[Part:BBa_K1045001|BBa_K1045001]] was used which sequence originated from PCR amplification from ''M. smegmatis'' chromosomal DNA. Part [[Part:BBa_K1045009|BBa_K1045009]] originated from PCR amplification of plasmid DNA derived from the distribution kit 2013.
+
For this composite part, part [[Part:BBa_K1045001|BBa_K1045001]] was used. Its sequence originated from PCR amplification from ''M. smegmatis'' chromosomal DNA. The genomic DNA of ''Mycobacterium smegmatis'' was purchased from DSMZ ([http://www.dsmz.de/catalogues/details/culture/DSM-43756.html?tx_dsmzresources_pi5%5BreturnPid%5D=304 DSM No. 43756]). Part [[Part:BBa_K1045009|BBa_K1045009]] originated from PCR amplification of plasmid DNA derived from the distribution kit 2013.
  
 
===References===
 
===References===
  
−
Lei Zhang, Weihui Li, and Zheng-Guo He (2013) “DarR, a TetR-like Transcriptional Factor, Is a Cyclic Di-AMP-responsive Repressor in Mycobacterium smegmatis”, THE JOURNAL OF BIOLOGICAL CHEMISTRY VOL. 288, NO. 5, pp. 3085–3096
+
Lei Zhang, Weihui Li, and Zheng-Guo He (2013) “DarR, a TetR-like Transcriptional Factor, Is a Cyclic Di-AMP-responsive Repressor in ''Mycobacterium smegmatis''”, THE JOURNAL OF BIOLOGICAL CHEMISTRY VOL. 288, NO. 5, pp. 3085–3096

Latest revision as of 14:04, 27 October 2013

Terminator BBa_B0015 with inversed Pre- and Suffix- DarR ORF with inversed Pre- and Suffix


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NotI site found at 718
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 731
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 168
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

The inverse DarR sequence was cut out from BBa_K1045001 and ligated in a post-fixing composition into the plasmid carrying BBa_K1045009.

Source

For this composite part, part BBa_K1045001 was used. Its sequence originated from PCR amplification from M. smegmatis chromosomal DNA. The genomic DNA of Mycobacterium smegmatis was purchased from DSMZ ([http://www.dsmz.de/catalogues/details/culture/DSM-43756.html?tx_dsmzresources_pi5%5BreturnPid%5D=304 DSM No. 43756]). Part BBa_K1045009 originated from PCR amplification of plasmid DNA derived from the distribution kit 2013.

References

Lei Zhang, Weihui Li, and Zheng-Guo He (2013) “DarR, a TetR-like Transcriptional Factor, Is a Cyclic Di-AMP-responsive Repressor in Mycobacterium smegmatis”, THE JOURNAL OF BIOLOGICAL CHEMISTRY VOL. 288, NO. 5, pp. 3085–3096