Difference between revisions of "Part:BBa K1045014:Design"

(→‎Source)
(→‎Source)
Line 13: Line 13:
  
 
The hybridization oligos mentioned under "Design Notes" were purchased from Sigma-Aldrich. The sequence of the promoter originated from the Parts Registry page of [[Part:BBa_J23117|BBa_J23117]]. The 54 bp upstream of the promoter represent a random sequence which would translate into "cyclicdiampacterim".
 
The hybridization oligos mentioned under "Design Notes" were purchased from Sigma-Aldrich. The sequence of the promoter originated from the Parts Registry page of [[Part:BBa_J23117|BBa_J23117]]. The 54 bp upstream of the promoter represent a random sequence which would translate into "cyclicdiampacterim".
−
[[Part:BBa_K1045013|BBa_K1045013]] originated from hybridization oligos for [[Part:BBa_J23110|BBa_J23110]] and the DarR operator ([[Part:BBa_K1045000|BBa_K1045000]]). The sequence information was obtained from the parts registry or from Zhang ''et al''., 2013. These hybridization oligos were purchased from Sigma-Aldrich. In addition, [[Part:BBa_K1045013|BBa_K1045013]] harbors [[Part:BBa_E0240|BBa_E0240]] which was taken from the distribution kit 2013.
+
[[Part:BBa_K1045013|BBa_K1045013]] originated from the composite part [[Part:BBa_K1045012|BBa_K1045012]] and [[Part:BBa_E0240|BBa_E0240]]. [[Part:BBa_K1045012|BBa_K1045012]] derived from hybridization oligos. The sequence information for these hybridization oligos was obtained from the parts registry (promoter [[Part:BBa_J23110|BBa_J23110]]) or from Zhang ''et al''., 2013 (DarR operator [[Part:BBa_K1045000|BBa_K1045000]]). The hybridization oligos were purchased from Sigma-Aldrich. [[Part:BBa_E0240|BBa_E0240]] which was taken from the distribution kit 2013.
  
 
===References===
 
===References===

Revision as of 15:09, 16 October 2013

Promoter reverse - Promoter - DarR operator - GFP generator BBa_E0240


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 1
    Illegal NheI site found at 24
    Illegal NheI site found at 104
    Illegal NheI site found at 127
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 55
    Illegal AgeI site found at 963
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 825


Design Notes

This part was constructed using hybridization oligos for BBa_K1045011. The hybridization product corresponded to a DNA fragment harboring the sequence of BBa_K1045011 cut with EcoRI and SpeI at the prefix and suffix sites. This fragment was ligated into BBa_K1045013 in a prefixing composition.

This biobrick harbors a mutation in the suffix sequence. The mutated suffix sequence is: TACTAGTAACGGCCGCTGCAG. This eliminates the NotI restriction site. The plasmid might still be cut with SpeI and PstI.

Source

The hybridization oligos mentioned under "Design Notes" were purchased from Sigma-Aldrich. The sequence of the promoter originated from the Parts Registry page of BBa_J23117. The 54 bp upstream of the promoter represent a random sequence which would translate into "cyclicdiampacterim". BBa_K1045013 originated from the composite part BBa_K1045012 and BBa_E0240. BBa_K1045012 derived from hybridization oligos. The sequence information for these hybridization oligos was obtained from the parts registry (promoter BBa_J23110) or from Zhang et al., 2013 (DarR operator BBa_K1045000). The hybridization oligos were purchased from Sigma-Aldrich. BBa_E0240 which was taken from the distribution kit 2013.

References