Difference between revisions of "PBAD SPL"

(→‎DTU pBAD SPL)
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|align="center"|Col. 2
 
|align="center"|Col. 2
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|<font face="Courier" size="+1">CTGACGACGCCCCTCTCCGCCCCTTAAAATGTCCA</font>
+
|<font face="Courier" size="+1" class=">CTGACGACGCCCCTCTCCGCCCCTTAAAATGTCCA</font>
 
|align="center"|14.2
 
|align="center"|14.2
 
|align="center"|0.203
 
|align="center"|0.203
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|-
 
|-
 
|align="center"|test
 
|align="center"|test
−
|<font face="Courier" size="+1"><font color="green">tt</font><font color="orange">g</font><font color="blue">a</font><font color="red">c</font>tagctcagtcctaggtatt<font color="red">g</font>tgctagc</font>
+
|<!--<font face="Courier" size="+1"><font color="green">tt</font><font color="orange">g</font><font color="blue">a</font><font color="red">c</font>tagctcagtcctaggtatt<font color="red">g</font>tgctagc</font>-->
 
|align="center"|0.56
 
|align="center"|0.56
 
|-
 
|-
 
|}
 
|}
 +
 +
<html>
 +
<script>
 +
function more_color(){
 +
    var amino_string_containers = $("table font");
 +
    for(var i=0; i < amino_string_containers.length; i++){
 +
        var amino_string_container = amino_string_containers[i];
 +
        var amino_string = amino_string_container.textContent;
 +
        amino_string_container.textContent = "";
 +
        for(var j=0; j < amino_string.length; j++){
 +
            var letter = amino_string[j];
 +
            var color = "black";
 +
            if( letter == "C"){
 +
                color = "green";
 +
            } else if( letter == "A"){
 +
                color = "blue";
 +
            } else if( letter == "T"){
 +
                color = "orange";
 +
            } else if( letter == "G"){
 +
                color = "red";
 +
            }
 +
            $(amino_string_container).append("<font color=" + color + ">" + letter + "</font>");
 +
        }
 +
    }
 +
}
 +
 +
</script>
 +
</html>

Revision as of 12:51, 4 October 2013

Here the DTU iGEM team will present their work on characterizing a SPL of pBAD promoters.

List of sequences:

DTU pBAD SPL

Identifier Sequence Induced Strength Leakyness Inducibilitya
Col. 2 CTGACGACGCCCCTCTCCGCCCCTTAAAATGTCCA 14.2 0.203 69.9
Col. 3 CTGACGTAATCATACCGCCGAAAGTATTATCATTA 16.6 0.426 39
Col. 4 CTGACGCGACAACATTGCGTCCTATAAAATGCCGA 14.2 0.345 41
Col. 5 CTGACGGCCCGCCCCCGATGCGCATAAAATACCAA 17.7 0.424 41.6
Col. 12 CTGACGCGTATCGCGAGCGGGCGTTATTATACGCA 13.6 0.414 32.9
Col. 10 CTGACGCCCCGAATCAGTAGTATTTATTATCTAGA 18 0.462 38.8
Col. 9 CTGACGCCACCCCCCCCCCCGGCGTATAATTCCCA 16.1 0.530 30.4
Col. 8 CTGACGCCCTACCGCTCGCCCCCCTATTATACCCA 13.4 0.211 63.4
Col. 13 CTGACGCCCCCCCCGTCCACCCCCTAATATCCCGA 10.9 0.096 113.6
Col. 15 CTGACGTGCGCCTGCCGTCCAAAGTAATATCCTTA 15.5 0.235 65.8
Col. 18 CTGACGCCCCGAATCAGTAGTATTTATTATCTAGA 19.8 0.524 37.8
Col. 19 CTGACGCTCGCACCGGCGACCCGATAATATCCATA 18.0 0.315 57
Col. 31 CTGACGCCCCCCCTCCCCCGACCTAAAATATCCAG 3.8 0.161 23.6
Col. 29 CTGACGCCGCTGCACCCGTCCCCCTATTATAGCAA 14.8 0.301 49.2
Col. 26 CTGACGCCGATCCTATCTCCCTATTAAAATTTTTA 13.8 0.292 47.2
Col. 22 CTGACGCCCCGAATCAGTAGTATTTATTATCTAGA 16.8 0.466 36.1
Col. 33 CTGACGCCAGCTTCCTACTTCAAATATAATCCGTA 14.4 1.01 14.3
Col. 34 CTGACGTCCCTCTTCCGCGCCCCCTAAAATACCCA 12.4 0.187 65.9
Col. 35 CTGACGCCCAACCCGACACAGCGATATAATAATGA 18.4 0.89 20.7
test 0.56