Difference between revisions of "Part:BBa K1080012"
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<span class='h3bb'>Sequence and Features</span>
 
<span class='h3bb'>Sequence and Features</span>
 
<partinfo>BBa_K1080012 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K1080012 SequenceAndFeatures</partinfo>
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<br>
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<br>
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<br>
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<b>Amino acid sequence</b>
  
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<FONT FACE="courier">MAMAASRQAV RVAAAVDADY RKREPKDVRV LVVGPTGYIG KFVVKELVSR GYNVVAFARE<br> NAGIKGKMGR EDIVKEFHGA EVRFGSVLDP ASLRDVAFKD PVDVVVSCLA SRTGGKKDSW<br> LIDYTATKNS LDVARASGAK HFVLLSAICV QKPLLEFQKA KLQFESDLQA AGDITYSIVR<br> PTAFFKSIAG QIDIVKKGNP YVMFGDGNLA ACKPISEADL ASFIADCVTE QNKVNKVLPI<br> GGPSKAFTAK QQADLLFNIT GLPPKYFPVP VALMDGMIGL FDSLAKLFPQ LEDSAEFARI<br>  GKYYATESML VYDEARGVYR KTKRLVTART RWKTSSLVQ  </FONT>
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References and documentation are available.
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Please note the modified algorithm for extinction coefficient.
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--------------------------------------------------------------------------------
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Number of amino acids: 339
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Molecular weight: 37034.9
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Theoretical pI: 9.40
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Amino acid composition: Ala (A)  40 11.8%
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Arg (R)  19   5.6%
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Asn (N)  8   2.4%
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Asp (D)  22   6.5%
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Cys (C)  4   1.2%
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Gln (Q)  11   3.2%
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Glu (E)  14   4.1%
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Gly (G)  24   7.1%
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His (H)  2   0.6%
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Ile (I)  16   4.7%
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Leu (L)  27   8.0%
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Lys (K)  29   8.6%
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Met (M)  7   2.1%
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Phe (F)  18   5.3%
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Pro (P)  15   4.4%
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Ser (S)  21   6.2%
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Thr (T)  14   4.1%
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Trp (W)  2   0.6%
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Tyr (Y)  11   3.2%
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Val (V)  35 10.3%
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Pyl (O)  0   0.0%
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Sec (U)  0   0.0%
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(B)  0   0.0%
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(Z)  0   0.0%
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(X)  0   0.0%
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Total number of negatively charged residues (Asp + Glu): 36
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Total number of positively charged residues (Arg + Lys): 48
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Atomic composition:
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Carbon      C       1670
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Hydrogen    H       2668
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Nitrogen    N       450
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Oxygen      O       477
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Sulfur      S         11
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Formula: C1670H2668N450O477S11
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Total number of atoms: 5276
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Extinction coefficients:
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Extinction coefficients are in units of  M-1 cm-1, at 280 nm measured in water.
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Ext. coefficient    27640
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Abs 0.1% (=1 g/l)  0.746, assuming all pairs of Cys residues form cystines
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Ext. coefficient    27390
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Abs 0.1% (=1 g/l)  0.740, assuming all Cys residues are reduced
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Estimated half-life:
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The N-terminal of the sequence considered is M (Met).
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The estimated half-life is:
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                            30 hours (mammalian reticulocytes, in vitro).
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                            >20 hours (yeast, in vivo).
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                            >10 hours (Escherichia coli, in vivo).
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Instability index:
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The instability index (II) is computed to be 31.02
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This classifies the protein as stable.
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Aliphatic index: 91.21
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Grand average of hydropathicity (GRAVY): -0.019
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===Source===
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Chlamydomonas reinhardtii
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===References===
  
 
<!-- Uncomment this to enable Functional Parameter display  
 
<!-- Uncomment this to enable Functional Parameter display  

Revision as of 22:35, 27 September 2013

DVR1


3,8-divinyl protochlorophyllidea 8-vinyl reductase - Predicted chloroplast transit peptide 1-58; [PMID: 15695432; 15849308]

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 288
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]




Amino acid sequence

MAMAASRQAV RVAAAVDADY RKREPKDVRV LVVGPTGYIG KFVVKELVSR GYNVVAFARE
NAGIKGKMGR EDIVKEFHGA EVRFGSVLDP ASLRDVAFKD PVDVVVSCLA SRTGGKKDSW
LIDYTATKNS LDVARASGAK HFVLLSAICV QKPLLEFQKA KLQFESDLQA AGDITYSIVR
PTAFFKSIAG QIDIVKKGNP YVMFGDGNLA ACKPISEADL ASFIADCVTE QNKVNKVLPI
GGPSKAFTAK QQADLLFNIT GLPPKYFPVP VALMDGMIGL FDSLAKLFPQ LEDSAEFARI
GKYYATESML VYDEARGVYR KTKRLVTART RWKTSSLVQ

References and documentation are available. Please note the modified algorithm for extinction coefficient.

Number of amino acids: 339

Molecular weight: 37034.9

Theoretical pI: 9.40

Amino acid composition: Ala (A) 40 11.8% Arg (R) 19 5.6% Asn (N) 8 2.4% Asp (D) 22 6.5% Cys (C) 4 1.2% Gln (Q) 11 3.2% Glu (E) 14 4.1% Gly (G) 24 7.1% His (H) 2 0.6% Ile (I) 16 4.7% Leu (L) 27 8.0% Lys (K) 29 8.6% Met (M) 7 2.1% Phe (F) 18 5.3% Pro (P) 15 4.4% Ser (S) 21 6.2% Thr (T) 14 4.1% Trp (W) 2 0.6% Tyr (Y) 11 3.2% Val (V) 35 10.3% Pyl (O) 0 0.0% Sec (U) 0 0.0% 

(B)   0	  0.0%
(Z)   0	  0.0%
(X)   0	  0.0%


Total number of negatively charged residues (Asp + Glu): 36 Total number of positively charged residues (Arg + Lys): 48

Atomic composition:

Carbon C 1670 Hydrogen H 2668 Nitrogen N 450 Oxygen O 477 Sulfur S 11

Formula: C1670H2668N450O477S11 Total number of atoms: 5276

Extinction coefficients:

Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water.

Ext. coefficient 27640 Abs 0.1% (=1 g/l) 0.746, assuming all pairs of Cys residues form cystines


Ext. coefficient 27390 Abs 0.1% (=1 g/l) 0.740, assuming all Cys residues are reduced

Estimated half-life:

The N-terminal of the sequence considered is M (Met).

The estimated half-life is: 

                            30 hours (mammalian reticulocytes, in vitro).
                           >20 hours (yeast, in vivo).
                           >10 hours (Escherichia coli, in vivo).


Instability index:

The instability index (II) is computed to be 31.02 This classifies the protein as stable.


Aliphatic index: 91.21

Grand average of hydropathicity (GRAVY): -0.019

Source

Chlamydomonas reinhardtii

References