Difference between revisions of "Part:BBa K1031444"
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<p>For detailed information concerning HcaR, please visit <a href="http://2013.igem.org/Team:Peking/Project/BioSensors/HcaR#Mileston1">2013 Peking iGEM Biosensor HcaR</a></p> | <p>For detailed information concerning HcaR, please visit <a href="http://2013.igem.org/Team:Peking/Project/BioSensors/HcaR#Mileston1">2013 Peking iGEM Biosensor HcaR</a></p> | ||
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== '''Characterization''' == | == '''Characterization''' == | ||
| − | + | In order to fine-tune the performance of HcaR biosensor, we constructed a library of ''Pc'' constitutive promoters and RBSs (Ribosome Binding Sites) at different intensity. BBa_K1031444 is composed of three elements, the constitutive ''Pc'' promoter <html><a href="https://parts.igem.org/Part:BBa_J23114">J23114</a></html>, coding sequence of HcaR and terminator <html><a href="https://parts.igem.org/Part:BBa_B0015">B0015</a></html>. ('''Fig 1''') | |
| − | In order to fine-tune the performance of HcaR biosensor, we constructed a library of ''Pc'' constitutive promoters at different intensity. BBa_K1031444 is composed of three elements, the constitutive ''Pc'' promoter | + | |
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| − | <img src="https://static.igem.org/mediawiki/igem.org/thumb/5/5b/Peking2013_part_114-HcaR.png/800px-Peking2013_part_114-HcaR.png" | + | <img src="https://static.igem.org/mediawiki/igem.org/thumb/5/5b/Peking2013_part_114-HcaR.png/800px-Peking2013_part_114-HcaR.png" style="width:600px; margin-left:170px" /> |
| + | <p style="text-align:center"><b>Fig 1</b> Construction of biosensor circuit <i>Ph</i>/J23114-HcaR | ||
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| − | We constructed a RBS library of different intensity controlling expression of sfGFP in collocation with Ph/J23114-HcaR biosensor circuit. The dashed box refers to data for ''Ph | + | We constructed a RBS library of different intensity controlling expression of sfGFP in collocation with ''Ph''/J23114-HcaR biosensor circuits. The last three lines are data for ''Ph''/J23114-HcaR circuit in collocation with RBS B0031, B0032 and B0034 respectively. The dashed box refers to data for ''Ph''/J23114-HcaR circuit adopting RBS B0031('''Fig 2'''), which obtains slight better performance comparing with B0032, B0033 and B0034, indicating that for ''Pc'' J23114, tuning for RBS doesn't obtain obvious effect. |
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| − | <img src="https://static.igem.org/mediawiki/igem.org/thumb/a/ | + | <img src="https://static.igem.org/mediawiki/igem.org/thumb/a/a4/Peking2013_part_K1031444.png/800px-Peking2013_part_K1031444.png" style="width:600px; margin-left:170px" /> |
| − | < | + | <p style="text-align:center"><b>Fig 2</b> Induction ratio of HcaR biosensor library test. Horizontal axis stands for different HcaR biosensor with <i>Pc</i> promoters of different strength. The expression strength of these constitutive promoters, J23113, J23109, J23114, J23105, J23106 is 21, 106, 256, 623, and 1185, respectively, according to the Partsregistry. Four kinds of aromatics shown with different color intensities, were tested following <a href="http://2013.igem.org/Team:Peking/Team/Notebook/Protocols">Test Protocol 1</a>. Vertical axis represents the ON-OFF induction ratio. The dashed box refers to performance for <i>Ph</i>/J23114-HcaR biosensor with RBS B0031. |
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===Functional Parameters=== | ===Functional Parameters=== | ||
| − | <partinfo> | + | <partinfo>BBa_K1031444 parameters</partinfo> |
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Latest revision as of 22:19, 27 September 2013
J23114-HcaR
For detailed information concerning HcaR, please visit 2013 Peking iGEM Biosensor HcaR
Characterization
In order to fine-tune the performance of HcaR biosensor, we constructed a library of Pc constitutive promoters and RBSs (Ribosome Binding Sites) at different intensity. BBa_K1031444 is composed of three elements, the constitutive Pc promoter J23114, coding sequence of HcaR and terminator B0015. (Fig 1)
Fig 1 Construction of biosensor circuit Ph/J23114-HcaR
Sequence and Features
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12INCOMPATIBLE WITH RFC[12]Illegal NheI site found at 7
Illegal NheI site found at 30 - 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal NgoMIV site found at 892
Illegal AgeI site found at 565 - 1000COMPATIBLE WITH RFC[1000]
Data shown
We constructed a RBS library of different intensity controlling expression of sfGFP in collocation with Ph/J23114-HcaR biosensor circuits. The last three lines are data for Ph/J23114-HcaR circuit in collocation with RBS B0031, B0032 and B0034 respectively. The dashed box refers to data for Ph/J23114-HcaR circuit adopting RBS B0031(Fig 2), which obtains slight better performance comparing with B0032, B0033 and B0034, indicating that for Pc J23114, tuning for RBS doesn't obtain obvious effect.
Fig 2 Induction ratio of HcaR biosensor library test. Horizontal axis stands for different HcaR biosensor with Pc promoters of different strength. The expression strength of these constitutive promoters, J23113, J23109, J23114, J23105, J23106 is 21, 106, 256, 623, and 1185, respectively, according to the Partsregistry. Four kinds of aromatics shown with different color intensities, were tested following Test Protocol 1. Vertical axis represents the ON-OFF induction ratio. The dashed box refers to performance for Ph/J23114-HcaR biosensor with RBS B0031.