Difference between revisions of "Part:BBa K1119008"
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In characterization of Mitochondrial Leader Sequence ([[Part:BBa_K1119001|BBa_K1119001]]), negative control was made by GFP generator that does not contains the CDS of MLS ([[Part:BBa_K1119008|BBa_K1119008]]). The translation unit was driven by CMV promoter ([[Part:BBa_K1119006|BBa_K1119006]]) and terminated by hGH polyA signal ([[Part:BBa_K404108|BBa_K404108]]). | In characterization of Mitochondrial Leader Sequence ([[Part:BBa_K1119001|BBa_K1119001]]), negative control was made by GFP generator that does not contains the CDS of MLS ([[Part:BBa_K1119008|BBa_K1119008]]). The translation unit was driven by CMV promoter ([[Part:BBa_K1119006|BBa_K1119006]]) and terminated by hGH polyA signal ([[Part:BBa_K404108|BBa_K404108]]). | ||
+ | |||
+ | Since only short 5' untranscribed region ie. 6bp is included in the CMV promoter, future user may need to include spacer between CMV promoter and CDS to ensure successful translation. | ||
===Result=== | ===Result=== |
Revision as of 12:19, 26 September 2013
CMV promoter - GFP - hGH polyA tail
In characterization of Mitochondrial Leader Sequence (BBa_K1119001), negative control was made by GFP generator that does not contains the CDS of MLS (BBa_K1119008). The translation unit was driven by CMV promoter (BBa_K1119006) and terminated by hGH polyA signal (BBa_K404108).
Since only short 5' untranscribed region ie. 6bp is included in the CMV promoter, future user may need to include spacer between CMV promoter and CDS to ensure successful translation.
Result
In the characterization of CMV promoter (BBa_K1119006) , the coding sequence of CMV promoter was assembled with GFP reporter (BBa_K648013) and hGH polyA terminator (BBa_K404108) using Freiburg’s RFC25 format.
The pCMV-GFP was then transfected into HEK293FT cells and in vivo green fluorescence signal was observed under confocal microscope.
The positive control was pEGFP-N1 (Clontech) that contains CMV promoter and EGFP reporter. A negative control was made by GFP generator that does not contain the CMV promoter.
The [http://2013.igem.org/Team:Hong_Kong_HKUST/characterization detailed protocol] of our characterization can be found in HKUST iGEM 2013 Wiki.
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21INCOMPATIBLE WITH RFC[21]Illegal BglII site found at 614
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal NgoMIV site found at 628
Illegal AgeI site found at 1369 - 1000INCOMPATIBLE WITH RFC[1000]Illegal BsaI site found at 1772
Illegal BsaI.rc site found at 1274