Difference between revisions of "Part:BBa K1114702"

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This is a BioBrick adaptation of a Level 1 <a href="http://2013.igem.org/Team:BostonU/MoCloChara">MoClo</a> device that constitutively expresses RFP. It contains the Level 0 parts <a href="https://parts.igem.org/Part:BBa_K1114005">J23104_AB</a>, <a href="https://parts.igem.org/Part:BBa_K1114106:Design">BCD1_BC</a>, <a href="https://parts.igem.org/Part:BBa_K1114211">E0040m_CD</a>, and <a href="https://parts.igem.org/Part:BBa_K1114300">B0015_DE</a> within the <a href="https://parts.igem.org/Part:pSB1C3">pSB1C3</a> backbone. In the given sequence the internal fusion sites are incorrectly duplicated.
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This is a BioBrick adaptation of a Level 1 <a href="http://2013.igem.org/Team:BostonU/MoCloChara">MoClo</a> device that constitutively expresses RFP. The MoClo version of this device is <a href="https://parts.igem.org/Part:BBa_K1114500"<BBa_K1114500</a>.
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This transcriptional unit contains the MoClo Level 0 parts <a href="https://parts.igem.org/Part:BBa_K1114005">J23104_AB</a>, <a href="https://parts.igem.org/Part:BBa_K1114106:Design">BCD1_BC</a>, <a href="https://parts.igem.org/Part:BBa_K1114211">E0040m_CD</a>, and <a href="https://parts.igem.org/Part:BBa_K1114300">B0015_DE</a> within the <a href="https://parts.igem.org/Part:pSB1C3">pSB1C3</a> backbone. In the given sequence the internal fusion sites are incorrectly duplicated.
 
The fusion site letters refer to 4bp fusion sites: A = GGAG; B = TACT; C = AATG; D = AGGT; E = GCTT; F = CGCT; G = TGCC; H = ACTA. See Level 0 pages for further information.  
 
The fusion site letters refer to 4bp fusion sites: A = GGAG; B = TACT; C = AATG; D = AGGT; E = GCTT; F = CGCT; G = TGCC; H = ACTA. See Level 0 pages for further information.  
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This device was converted into a BioBrick standard device using PCR to simultaneously remove the MoClo 5' and 3' sequences and insert the BioBrick 5' and 3' ends in their place. The PCR product was purified and digested with XbaI and PstI, and ligated into pSB1C3 (which was also cut with XbaI and PstI). 
  
  

Revision as of 18:11, 24 September 2013

BioBrick adaptation of MoClo Level 1 Reporter

This is a BioBrick adaptation of a Level 1 MoClo device that constitutively expresses RFP. The MoClo version of this device is .

This transcriptional unit contains the MoClo Level 0 parts
J23104_AB, BCD1_BC, E0040m_CD, and B0015_DE within the pSB1C3 backbone. In the given sequence the internal fusion sites are incorrectly duplicated. The fusion site letters refer to 4bp fusion sites: A = GGAG; B = TACT; C = AATG; D = AGGT; E = GCTT; F = CGCT; G = TGCC; H = ACTA. See Level 0 pages for further information.

This device was converted into a BioBrick standard device using PCR to simultaneously remove the MoClo 5' and 3' sequences and insert the BioBrick 5' and 3' ends in their place. The PCR product was purified and digested with XbaI and PstI, and ligated into pSB1C3 (which was also cut with XbaI and PstI).

This part contains a bicistronic design (BCD) element as the 5' UTR regulatory part from Mutalik et al., 2013. From the library of BCDs, this devices contains a MoClo version of BCD1 (BioFAB # apFAB681) and we obtained the sequence data for this part from the BioFAB.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 11
    Illegal NheI site found at 34
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 694
    Illegal AgeI site found at 806
  • 1000
    COMPATIBLE WITH RFC[1000]