Difference between revisions of "Part:BBa K1041001:Experience"

(→‎Sequencing)
(→‎BLAST Analysis)
Line 50: Line 50:
  
 
===BLAST Analysis===
 
===BLAST Analysis===
−
The data we recieved back from the sequencing company was aligned using BLAST with the expected DNA sequence. The sequencing with both the forward and reverse primers had over 98% matches with the expected DNA sequence.   
+
The data we recieved back from the sequencing company was aligned using BLAST with the expected DNA sequence ''Fig 5,6''. The sequencing with both the forward and reverse primers had over 98% matches with the expected DNA sequence.   
−
[[image:1 Fwd.JPG|thumb|left|Fig: Forward primer K1041001 sequencing data aligned with the expected DNA sequence]]
+
[[image:1 Fwd.JPG|thumb|left|Fig 5: Forward primer K1041001 sequencing data aligned with the expected DNA sequence]]
−
[[image:1 Rev.JPG|thumb|left|Fig: Reverse primer K1041001 sequencing data aligned with the expected DNA sequence]]
+
[[image:1 Rev.JPG|thumb|left|Fig 6: Reverse primer K1041001 sequencing data aligned with the expected DNA sequence]]
  
 
===User Reviews===
 
===User Reviews===

Revision as of 10:26, 23 September 2013


This experience page is provided so that any user may enter their experience using this part.
Please enter how you used this part and how it worked out.

Team NRP-UEA_Norwich 2013

Team NRP-UEA_Norwich 2013 designed this part to contain the promoter sequence AntG, where the unique sigma factor AntA binds to activate transcription of the neomycin resistance gene. There is a Nde1 resticition site between the promoter and gene to allow either to be removed and exchanged for a different promoter or gene. This facilitated cloning of the biobrick Bba_K1041002

Characterisation of this biobrick involved sequencing, restriction digests and BLAST analysis.

Restriction Digest

Part Bba_K1041001 was cut with enzymes XbaI and NdeI and compared to the uncut DNA. Fig 1

Fig 1:Lane 1 contains uncut Bba_K1041001 and Lane 2 Bba_K1041001 cut with XbaI and NdeI.


















Sequencing

The biobrick was sent off to a company for sequencing and the data we received back Fig 2,3,4 showed the DNA is of good quality.

Fig 2:K1041001 sequencing data part 1
Fig 3:K1041001 sequencing data part 2
Fig 4:K1041001 sequencing data part 3











BLAST Analysis

The data we recieved back from the sequencing company was aligned using BLAST with the expected DNA sequence Fig 5,6. The sequencing with both the forward and reverse primers had over 98% matches with the expected DNA sequence.

Fig 5: Forward primer K1041001 sequencing data aligned with the expected DNA sequence
Fig 6: Reverse primer K1041001 sequencing data aligned with the expected DNA sequence

User Reviews

UNIQ3780a53e514837a6-partinfo-00000000-QINU UNIQ3780a53e514837a6-partinfo-00000001-QINU