Difference between revisions of "Part:BBa K1041001:Experience"

Revision as of 11:31, 20 September 2013

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Please enter how you used this part and how it worked out.

Team NRP-UEA_Norwich 2013

Team NRP-UEA_Norwich 2013 designed this part to contain the promoter sequence AntG, where the unique sigma factor AntA binds to activate transcription of the neomycin resistance gene. There is a Nde1 resticition site between the promoter and gene to allow either to be removed and exchanged for a different promoter or gene. This facilitated cloning of the biobrick Bba_K1041002

Characterisation of this biobrick involved sequencing, restriction digests and BLAST analysis.

Restriction Digest

Part Bba_K1041001 was cut with enzymes XbaI and NdeI and compared to the uncut DNA. Fig 1

Fig 1:Lane 1-3 contains uncut Bba_K1041001 and Bba_K1041001 cut with XbaI and NdeI then EcoRI and SpeI respectively.

Sequencing

The biobrick was sent off to a company for sequencing and the data we received back Fig showed the DNA is of good quality.

K1041001 sequencing data part 1

K1041001 sequencing data part 2

K1041001 sequencing data part 3

BLAST Analysis

The data we recieved back from the sequencing company was aligned using BLAST with the expected DNA sequence. The sequencing with both the forward and reverse primers had over 98% matches with the expected DNA sequence.

Fig: Forward primer K1041001 sequencing data aligned with the expected DNA sequence

Fig: Reverse primer K1041001 sequencing data aligned with the expected DNA sequence

User Reviews

UNIQaf868c20f93a0038-partinfo-00000000-QINU UNIQaf868c20f93a0038-partinfo-00000001-QINU