Difference between revisions of "Part:BBa J45006:Design"

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===Design Notes===
 
===Design Notes===
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 +
<b>WE WANT TO REORDER: new forward and new reverse primers (6/26) </b>
 +
 
*Eliminated EcoRI site at base pair 412 by changing base pair 414 from A to G
 
*Eliminated EcoRI site at base pair 412 by changing base pair 414 from A to G
 
*forward primer: 5'- GTT TCT TCG AAT TCG CGG CCG CTT CTA G<b>AT GAA TGA AAT CGA TGA G</b> -3'
 
*forward primer: 5'- GTT TCT TCG AAT TCG CGG CCG CTT CTA G<b>AT GAA TGA AAT CGA TGA G</b> -3'

Revision as of 15:50, 26 June 2006


alcohol acetyltransferase I (ATF1)


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 99
    Illegal BamHI site found at 1426
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI.rc site found at 526
    Illegal SapI.rc site found at 1534


Design Notes

WE WANT TO REORDER: new forward and new reverse primers (6/26)

  • Eliminated EcoRI site at base pair 412 by changing base pair 414 from A to G
  • forward primer: 5'- GTT TCT TCG AAT TCG CGG CCG CTT CTA GAT GAA TGA AAT CGA TGA G -3'
  • new forward primer: 5' - GTT TCT TCG AAT TCG CGG CCG CTT CTA GAT GAA TGA AAT CGA TGA GAA AAA TC -3'
  • new reverse primer: 5'- GTT TCT TCC TGC AGC GGC CGC TAC TAG TAT TAT TAa ggg cct aaa agg aga gct ttg -3'
  • forward mutagenesis primer: 5' GAA GCA AAT ATT AGA AGA GTT CAA AAA TAG TAA GGG 3'
  • reverse mutagenesis primer: 5' CCC TTA CTA TTT TTG AAC TCT TCT AAT ATT TGC TTC 3'

Source

Source: S. cerevisiae, chromosome XV

Sequence obtained from Genbank, accession number [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=Nucleotide&dopt=GenBank&val=1420813 Z75285]

References

<biblio>

    • Horton03 pmid=12937998

</biblio>