Difference between revisions of "Part:BBa K883001"

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<partinfo>BBa_K883001 short</partinfo>
 
<partinfo>BBa_K883001 short</partinfo>
  
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CCMV is an abriviation of the Cowpea Chlorotic Mottle Virus, one of the most studied viruses in producing Virus Like Particles (VLPs). This part is the coding sequence of the coat protein of the CCMV virus. When expressed in Escherichia coli, these coat proteins can be harvested and be assembled in vitro using the Wageningen_UR iGEM 2012 protocols. This part is provided for the iGEM community so that they can use this part to produce these VLPs for their one own use, including but not limited to packaging, making fusion proteins to the N/C terminal. This all for to be used in a wide variety of applications. for ideas what kind of applications can be mediated with CCMV VLPs, check http://2012.igem.org/Team:Wageningen_UR/Applications
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[http://2012.igem.org/Team:Wageningen_UR/ModifyingtheCCMV CCMV] is an abbreviation of the Cowpea Chlorotic Mottle Virus, one of the most studied viruses in producing [http://2012.igem.org/Team:Wageningen_UR/VLPs Virus Like Particles] (VLPs). This part is the coding sequence of the coat protein of the CCMV virus. When expressed in Escherichia coli, these coat proteins can be harvested and be assembled in vitro using the Wageningen_UR iGEM 2012 protocols. This part is provided for the iGEM community so that they can use this part to produce these VLPs for their one own use, including but not limited to packaging, making fusion proteins to the N/C terminal. This all for to be used in a wide variety of applications. for ideas what kind of applications can be mediated with CCMV VLPs, check http://2012.igem.org/Team:Wageningen_UR/Applications
 
   
 
   
  
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<li>[http://2012.igem.org/Team:Wageningen_UR/Protocol/RoundupCCMV CCMV purification protocol]</li>
 
<li>[http://2012.igem.org/Team:Wageningen_UR/Protocol/RoundupCCMV CCMV purification protocol]</li>
 
</ul>
 
</ul>
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===Results===
 
===Results===
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Next to Electron Microscopy we used Dynamic Light Scattering, With this technique we were able to get an another conformation of VLP formation, strenghtening that this part is working and that the protocol is able to produce VLPs. Besides detection with the DLS we also made a size distribution graph, seen in graph 1, form the raw data.
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Next to Electron Microscopy we used Dynamic Light Scattering, With this technique we were able to get an another conformation of VLP formation, strenghtening that this part is working and that the protocol is able to produce VLPs. Besides detection with the DLS we also made a size distribution graph, seen in graph 1, from the raw data.
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It shows that the predicted range is around 15 nm, which is roughly the size of the radius of the wild-type CCMV.
  
 
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<partinfo>BBa_K883001 parameters</partinfo>
 
<partinfo>BBa_K883001 parameters</partinfo>
  
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CCMV is a virus that can be useful in nanotechnology, this is because it is a well-studied virus and certain physical properties of the CCMV-VLP are already known. We want to provide additional information about the conditions in which the CCMVs are stable. These conditions are important when it comes to site-specific drug delivery. A better understanding of what will happen when the VLPs are injected into the bloodstream, will result into a better treatment for patients.
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To test the stability of the CCMV VLPs, we treat the VLPs under different conditions. One parameter we want to test is, the temperature stability of the CCMV VLPs. To test this we put the CCMV VLPs for 24 hours in waterbaths with different temperatures. These temperatures range from 5 degrees celcius to 40 degrees representing the ill human being. After the treatment we tested the samples under the DLS and EM.
  
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To test the stability of the CCMV VLPs, we treat the VLPs with certain conditions. One think we want to know is, does our VLPs withstand the temperature of a ill human being. To test this we put the CCMV VLPs for 24 hours in waterbaths with different temperatures. These temperatures range from 5 degrees celcius to 40 degrees representing the ill human being. After the treatment we tested the samples under the DLS and EM.
 
  
 
[[Image:T_depend.jpg|500px|center|thumb|''Graph 2: The temperature stability measurements of the wildtype CCMV VLPs'']]
 
[[Image:T_depend.jpg|500px|center|thumb|''Graph 2: The temperature stability measurements of the wildtype CCMV VLPs'']]
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[[Image:CCMVWT40.jpg|500px|center|thumb|''figure 2: Wildtype CCMV VLPs after 24h heat treatment, taken with the EM'']]
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[[Image:CCMVWT40.jpg|500px|center|thumb|''figure 2: Wildtype CCMV VLPs after 24h heat treatment of 40 degrees Celcius, taken with the EM'']]
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As seen in graph 2 and figure 2, the particles are still detected after a 24 hour treatment with 40 degrees Celcius. This means that the particles will not break down immidatly when exposed to the temperature of an ill human being.
  
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As seen in graph 1 and figure 1, the particles are still detected after a 24 hour treatment with the waterbaths. This shows that the particles can stay stable under temperature conditions of a ill human being.
 
  
  
 
CCMV VLPs are renown for its wide pH stability. It is stable between a pH range of 4.7 and 6.5. At a pH of 4.7 the CCMV is in it's unswollen form  with a radius of around 14 nm. At a pH of 6.5 it is in it's swollen form, the VLPs radius is around 15-16nm. It is possible to change form, but change the pH gradually with the use of dialysis. If you change the pH too sudden, the VLPs are falling apart and forms aggregates as seen in figure 3.
 
CCMV VLPs are renown for its wide pH stability. It is stable between a pH range of 4.7 and 6.5. At a pH of 4.7 the CCMV is in it's unswollen form  with a radius of around 14 nm. At a pH of 6.5 it is in it's swollen form, the VLPs radius is around 15-16nm. It is possible to change form, but change the pH gradually with the use of dialysis. If you change the pH too sudden, the VLPs are falling apart and forms aggregates as seen in figure 3.
 +
  
 
[[Image:CCMVWT65.jpg|500px|center|thumb|''figure 3: Wildtype CCMV VLPs aggregates after a sudden change of pH, taken with the EM'']]
 
[[Image:CCMVWT65.jpg|500px|center|thumb|''figure 3: Wildtype CCMV VLPs aggregates after a sudden change of pH, taken with the EM'']]
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To test the stability of the VLPs during a long period of time, we deviced a experiment. We produced multiple CCMV VLPs and measure them after 3, 6 and 24 hours after formation.
 
To test the stability of the VLPs during a long period of time, we deviced a experiment. We produced multiple CCMV VLPs and measure them after 3, 6 and 24 hours after formation.
 +
  
 
[[Image:Time_depend.jpg|500px|center|thumb|''Graph 3: The temperature stability measurements of the wildtype CCMV VLPs'']]
 
[[Image:Time_depend.jpg|500px|center|thumb|''Graph 3: The temperature stability measurements of the wildtype CCMV VLPs'']]
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In theory, under perfect conditions (pH at 4.7, T = 4 degrees Celcius) it is possbile to store the CCMV VLPs for a good few weeks. Be aware that aggregate formation may occure when the VLPs are exposed to changing pH or temperature.
 
In theory, under perfect conditions (pH at 4.7, T = 4 degrees Celcius) it is possbile to store the CCMV VLPs for a good few weeks. Be aware that aggregate formation may occure when the VLPs are exposed to changing pH or temperature.

Latest revision as of 14:25, 24 October 2012

CCMV wt coat protein under IPTG induced promoter

[http://2012.igem.org/Team:Wageningen_UR/ModifyingtheCCMV CCMV] is an abbreviation of the Cowpea Chlorotic Mottle Virus, one of the most studied viruses in producing [http://2012.igem.org/Team:Wageningen_UR/VLPs Virus Like Particles] (VLPs). This part is the coding sequence of the coat protein of the CCMV virus. When expressed in Escherichia coli, these coat proteins can be harvested and be assembled in vitro using the Wageningen_UR iGEM 2012 protocols. This part is provided for the iGEM community so that they can use this part to produce these VLPs for their one own use, including but not limited to packaging, making fusion proteins to the N/C terminal. This all for to be used in a wide variety of applications. for ideas what kind of applications can be mediated with CCMV VLPs, check http://2012.igem.org/Team:Wageningen_UR/Applications


Background

This part is made from the wild type CCMV coat protein. CCMV is the abbreviation of Cowpea Chlorotic Mottle Virus, and is a well studied black eyed pea infecting virus. It is a virus in the family Bromoviridae, and it is one of the most studied plant viruses. As from the discovery of the virus in 1967, it was an interesting virus due to the easy cultivation and harvesting procedures involved. Interest in this virus is especially in the ability to disassemble the virus, remove the content and refold the empty particle simply by altering the pH. This makes this virus one of the first and best studied Virus Like Particles.


Usage and Biology

Protocols for production and purification:

  • [http://2012.igem.org/Team:Wageningen_UR/Protocol/StartupCCMV CCMV production protocol part 1]
  • [http://2012.igem.org/Team:Wageningen_UR/Protocol/DialysisCCMV CCMV production protocol part 2]
  • [http://2012.igem.org/Team:Wageningen_UR/Protocol/RoundupCCMV CCMV purification protocol]

Results

In order for us to be a good and functional part, we want to know if VLPs are formed with this brick using the protocol from above. We used two methods to detect the VLPs, Electron Microscopy (EM) and Dynamic Light Scattering (DLS). These methods are described on the [http://2012.igem.org/Team:Wageningen_UR/MethodsDetection detection page] of the Wageningen UR 2012 iGEM team.


Figure 1: Wildtype CCMV VLPs taken with electron microscope


In figure 1 it shows that with the protocol it is possible to form VLPs of the wild-type CCMV monomers. This means we have a viable part and a working protocol to produce VLPs.


Graph 1: The size distribution according to the DLS of the wildtype CCMV VLPs.


Next to Electron Microscopy we used Dynamic Light Scattering, With this technique we were able to get an another conformation of VLP formation, strenghtening that this part is working and that the protocol is able to produce VLPs. Besides detection with the DLS we also made a size distribution graph, seen in graph 1, from the raw data. It shows that the predicted range is around 15 nm, which is roughly the size of the radius of the wild-type CCMV.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 368
  • 1000
    COMPATIBLE WITH RFC[1000]

Functional Parameters

CCMV is a virus that can be useful in nanotechnology, this is because it is a well-studied virus and certain physical properties of the CCMV-VLP are already known. We want to provide additional information about the conditions in which the CCMVs are stable. These conditions are important when it comes to site-specific drug delivery. A better understanding of what will happen when the VLPs are injected into the bloodstream, will result into a better treatment for patients.


To test the stability of the CCMV VLPs, we treat the VLPs under different conditions. One parameter we want to test is, the temperature stability of the CCMV VLPs. To test this we put the CCMV VLPs for 24 hours in waterbaths with different temperatures. These temperatures range from 5 degrees celcius to 40 degrees representing the ill human being. After the treatment we tested the samples under the DLS and EM.


Graph 2: The temperature stability measurements of the wildtype CCMV VLPs
figure 2: Wildtype CCMV VLPs after 24h heat treatment of 40 degrees Celcius, taken with the EM


As seen in graph 2 and figure 2, the particles are still detected after a 24 hour treatment with 40 degrees Celcius. This means that the particles will not break down immidatly when exposed to the temperature of an ill human being.


CCMV VLPs are renown for its wide pH stability. It is stable between a pH range of 4.7 and 6.5. At a pH of 4.7 the CCMV is in it's unswollen form with a radius of around 14 nm. At a pH of 6.5 it is in it's swollen form, the VLPs radius is around 15-16nm. It is possible to change form, but change the pH gradually with the use of dialysis. If you change the pH too sudden, the VLPs are falling apart and forms aggregates as seen in figure 3.


figure 3: Wildtype CCMV VLPs aggregates after a sudden change of pH, taken with the EM


To test the stability of the VLPs during a long period of time, we deviced a experiment. We produced multiple CCMV VLPs and measure them after 3, 6 and 24 hours after formation.


Graph 3: The temperature stability measurements of the wildtype CCMV VLPs


In theory, under perfect conditions (pH at 4.7, T = 4 degrees Celcius) it is possbile to store the CCMV VLPs for a good few weeks. Be aware that aggregate formation may occure when the VLPs are exposed to changing pH or temperature.

*Safety notice*

This part is isolated from a virus and, when assembled, will form particles that very much resemble this virus in size and shape. However, no additional viral information is stored in this part and viral infection and/or replication can therefore be ruled out. It is completely safe for use in normal laboratory circumstances.