Difference between revisions of "Part:BBa J45004:Design"

(Design Notes)
(Design Notes)
Line 18: Line 18:
 
*LENGTH: 51<br>
 
*LENGTH: 51<br>
 
*GC CONTENT: 39.2 %<br>
 
*GC CONTENT: 39.2 %<br>
*MELT TEMP:<br>
+
*MELT TEMP: 65.0 ºC<br>
 +
<br>
  
 
===Source===
 
===Source===

Revision as of 15:31, 9 June 2006


SAM:benzoic acid/salicylic acid carboxyl methyltransferase I; converts salicylic acid to methyl sali


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 663
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 204


Design Notes

Just CDS taken from GenBank

Designed Forward Strand (1 and 2): 5'- GTT TCT TCG AAT TCG CGG CCG CTT CTA GAG ATG GAA GTT GTT GAA GTT C -3'

  • LENGTH: 49
  • GC CONTENT: 46.9 %
  • MELT TEMP: 67.6 ºC


Designed Reverse Strand (phBSMT1): 5'- GTT TCT TCC TGC AGC GGC CGC TAC TAG TAT TAT TAA TTT ATT TTG GTC AAC -3'

  • LENGTH: 51
  • GC CONTENT: 39.2 %
  • MELT TEMP: 65.0 ºC


Source

Species: Petunia x hybrida from GenBank (AY233465); (also available: A. thaliana and N. suaveolens)

References

    • <biblio>Underwood05 pmid=15849311</biblio>
    • <biblio>Negre03 pmid=14630969</biblio>