Difference between revisions of "parts.igem.org:Bug reports"

Revision as of 19:54, 7 June 2006

1. Reshma 14:56, 16 Nov 2005 (EST): The registry appears to have some strange behavior when you try to enter a feature is whose starting coordinate is greater than its ending coordinate. It highlights two small stretches of sequence. (I was doing this in an effort to see if I could indicate features on the opposite strand.)
2. Reshma 14:56, 16 Nov 2005 (EST): When you add a feature that is only 1 nucleotide long (like a mutation). It highlights 4 bases in the sequence pane instead of 1.
   • BC 15:23, 8 Dec 2005 (EST): The same bug seems to occur for other small features. It seems to highlight not just 4 bases extra but everyting up to the next "gap" in the sequence display, i.e. up to the next multiple of 10. Based on a small sample size (B0036 in E7103 and I7102 and R0085)
   • Done - the new feature display does not have this bug - Randy
3. Reshma 15:52, 16 Nov 2005 (EST): Somehow I am unable to edit the sequence of the part I just created (BBa_I50000). When I go to edit the sequence, it seems to just concatenate the sequence I type in rather than replacing the original sequence.
   • Done - This bug was a result of a browser limit on the length of a line in a text box. We now display sequences with limited line length. - Randy
4. RS 15:15, 13 March 2006 (EST): The icon for primers doesn't show up in the deep component picture when primers are included as parts. Just a gap is shown.
   • Done - The icons have been added - Randy
5. RS 18:31, 13 March 2006 (EST): In part BBa_I51000, the full scar does not appear between BBa_B0045 and BBa_B0046. Two bases at the end of the scar are deleted (AG). I think that there might be a software error because BBa_B0046 begins with an ATG though it is not a coding sequence so the AG should not be deleted.
6. RS 17:20, 14 March 2006 (EST): I want to rename a part from pSB5AC4 to pSB5AC5. When I enter in the new part name, it doesn't save it.
7. Rshetty 17:14, 1 June 2006 (EDT): Although CDS's in the reverse orientation now have their graphics displayed properly, -35 and -10 regions do not.
8. RS 15:48, 2 June 2006 (EDT): pSB5A5 doesn't have any information on it part main page even though it has [http://parts.mit.edu/d/parts/partsdb/part_info.cgi?part_name=pSB5A5 hard information].
   • Fixed with new release - Randy
9. Drew 15:51, 7 June 2006 (EDT): This isn't a bug so much as an important new feature... the ability to export sequence information including annotation features in some standard format (e.g., genbank). Otherwise, it doesn't make sense for folks to use the Registry as a tool for annotating sequences (as the annotation information isn't exportable).