Difference between revisions of "Part:BBa K743010"
Juan Alamos (Talk | contribs) |
Juan Alamos (Talk | contribs) |
||
(2 intermediate revisions by 2 users not shown) | |||
Line 2: | Line 2: | ||
<partinfo>BBa_K743010 short</partinfo> | <partinfo>BBa_K743010 short</partinfo> | ||
− | psb1C3_IntS recombination plasmid has biobrick prefix and suffix sequences flanked by recombination sites | + | psb1C3_IntS recombination plasmid has biobrick prefix and suffix sequences flanked by recombination sites. Therefore it is designed to integrate any desired biobricks or other sequences into <i>Synechocystis PCC6803</i> chromosome and/or pSYSX endogenous plasmid while interrupting CopS gene coding sequence. |
− | + | This part has mRFP under LacI promoter (from this [https://parts.igem.org/Part:BBa_J04450 device]) between biobrick prefix and suffix for visual selection of biobrick integration in <i>E. coli</i>. | |
− | Synechocystis | + | <i>Synechocystis PCC6803</i> undergoes double homologous recombination naturally, so the use of recombination sites flanking prefix and suffix were designed with complete homology to CopS gene, present in the chromosome and in a endogenous plasmid. |
− | As CopS is essential for copper stress tolerance in this bacteria, by using this plasmid a succeptible strain incapable of thriving in the | + | |
+ | As CopS is essential for copper stress tolerance in this bacteria, by using this plasmid a succeptible strain incapable of thriving in the environment is created (see [https://parts.igem.org/Part:BBa_K743010:Design#References references] for more information). | ||
Latest revision as of 16:30, 28 September 2012
psb1C3_IntS recombination plasmid with RFP
psb1C3_IntS recombination plasmid has biobrick prefix and suffix sequences flanked by recombination sites. Therefore it is designed to integrate any desired biobricks or other sequences into Synechocystis PCC6803 chromosome and/or pSYSX endogenous plasmid while interrupting CopS gene coding sequence.
This part has mRFP under LacI promoter (from this device) between biobrick prefix and suffix for visual selection of biobrick integration in E. coli.
Synechocystis PCC6803 undergoes double homologous recombination naturally, so the use of recombination sites flanking prefix and suffix were designed with complete homology to CopS gene, present in the chromosome and in a endogenous plasmid.
As CopS is essential for copper stress tolerance in this bacteria, by using this plasmid a succeptible strain incapable of thriving in the environment is created (see references for more information).
Sequence and Features
- 10INCOMPATIBLE WITH RFC[10]Unknown
- 12INCOMPATIBLE WITH RFC[12]Unknown
- 21INCOMPATIBLE WITH RFC[21]Unknown
- 23INCOMPATIBLE WITH RFC[23]Unknown
- 25INCOMPATIBLE WITH RFC[25]Illegal prefix found in sequence at 1135
Illegal XbaI site found at 1150
Illegal SpeI site found at 2227
Illegal PstI site found at 2241
Illegal NgoMIV site found at 867
Illegal AgeI site found at 1937
Illegal AgeI site found at 2049 - 1000INCOMPATIBLE WITH RFC[1000]Illegal BsaI.rc site found at 2783