Difference between revisions of "Part:BBa K863110:Design"
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===Design Notes=== | ===Design Notes=== | ||
− | The sequence starts with the rest of the Freiburg-prefix (ATG and ''Ngo''MIV-restriction-site). The A from the startcodon ATG is the last base of the ''Xba''I restriction-site of the | + | The sequence starts with the rest of the Freiburg-prefix (ATG and ''Ngo''MIV-restriction-site). The A from the startcodon ATG is the last base of the ''Xba''I restriction-site of the [https://parts.igem.org/Assembly_standard_25 Standard 25] Prefix. I isolated 12 conserved Bases (4 AS) upstream of the cellulose binding domain and 6 bases downstream of the cellulose binding protein gene. The sequence ends with the ''Age''I-restriction-site of the Freiburg-Suffix, to make in frame assembly possible. |
− | + | Primers that were used to make this BioBrick: | |
+ | {| | ||
+ | |CBDclos_Freiburg-Prefix||GCTAGAATTCGCGGCCGCTTCTAGATGGCCGGCTCATCAATGTCAGTTGAATTTTAC | ||
+ | |- | ||
+ | |CBDclos_Freiburg_compl||ACGTCTGCAGCGGCCGCTACTAGTATTAACCGGTTGCAAATCCAAATTCAACATAT | ||
+ | |} | ||
− | + | ===Source=== | |
+ | Origin of the cellulose binding domain is a cloning-vector form the fermentation group of Bielefeld University. | ||
===References=== | ===References=== |
Latest revision as of 21:53, 26 September 2012
Cellulose binding Domain from Clostridium cellulovorans cellulose binding protein
Assembly Compatibility:
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal NgoMIV site found at 4
Illegal AgeI site found at 304 - 1000COMPATIBLE WITH RFC[1000]
Design Notes
The sequence starts with the rest of the Freiburg-prefix (ATG and NgoMIV-restriction-site). The A from the startcodon ATG is the last base of the XbaI restriction-site of the Standard 25 Prefix. I isolated 12 conserved Bases (4 AS) upstream of the cellulose binding domain and 6 bases downstream of the cellulose binding protein gene. The sequence ends with the AgeI-restriction-site of the Freiburg-Suffix, to make in frame assembly possible.
Primers that were used to make this BioBrick:
CBDclos_Freiburg-Prefix | GCTAGAATTCGCGGCCGCTTCTAGATGGCCGGCTCATCAATGTCAGTTGAATTTTAC |
CBDclos_Freiburg_compl | ACGTCTGCAGCGGCCGCTACTAGTATTAACCGGTTGCAAATCCAAATTCAACATAT |
Source
Origin of the cellulose binding domain is a cloning-vector form the fermentation group of Bielefeld University.