Difference between revisions of "Part:BBa K819005"

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This part serves as <b>an ultra sensitive photoreceptor</b> (which can sense light as weak as moonlight) and will induce a <b>light-dependent repression</b> of genes under specific promoters like [https://parts.igem.org/wiki/index.php?title=Part:BBa_K819002 RecA408 promoter] and [https://parts.igem.org/wiki/index.php?title=Part:BBa_K819017 SulA408 promoter].
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This part, which is a fusion protein, serves as <b>an ultra sensitive photoreceptor</b> (which can sense light as weak as moonlight) and will induce a <b>light-dependent repression</b> of genes under specific promoters like [https://parts.igem.org/wiki/index.php?title=Part:BBa_K819002 RecA408 promoter] and [https://parts.igem.org/wiki/index.php?title=Part:BBa_K819017 SulA408 promoter].
  
It is a fusion protein consisting of the DNA binding domain of repressor LexA originated from <i>E.coli</i> endogenous SOS system, and fungus <i>N.crass</i> light sensing protein VVD which forms a rapidly exchanging dimer when excited by blue light. Both the DNA binding doamin and dimerization domain of this protein were mutated at specific sites for better bio-orthogonality and higher on-off ratio. (to see the <b>design</b> page for details, please click [https://parts.igem.org/Part:BBa_K819005:Designing here])
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For the photosensor domain of this fusion protein, we chose VVD protein, the smallest photosensor protein known, which forms a rapidly exchanging dimer when excited by blue light. For the physiological function domain, we chose LexA protein, a bacteria transcription inhibitor, whose DNA binding domain rigorously requires help of the dimerization domain for its DNA binding activity. We fused these two separate domains together to form a fusion protein, which we termed our "Luminesensor". Both DNA binding domain and dimerization domain of this luminesensor was mutated at specific sites for better bio-orthogonality and higher on-off ratio.(to see the <b>design</b> page for details, please click [https://parts.igem.org/Part:BBa_K819005:Designing here])
  
We characterized this luminesensor in different ways and all the results showed that this luminesensor worked quite well. (to see the <b>characterization</b> page for details, please click [https://parts.igem.org/Part:BBa_K819005:Characterization here])
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We then characterized this luminesensor in different ways and all the results showed that this luminesensor could response to light quite well. (to see the <b>characterization</b> page for details, please click [https://parts.igem.org/Part:BBa_K819005:Characterization here])
  
 
To learn more details about this luminesensor and the related project by Peking 2012 iGEM team, please visit our [http://2012.igem.org/Team:Peking wiki]
 
To learn more details about this luminesensor and the related project by Peking 2012 iGEM team, please visit our [http://2012.igem.org/Team:Peking wiki]

Revision as of 18:03, 26 September 2012

Constitutive LuxBrick Generator



Summary


This part, which is a fusion protein, serves as an ultra sensitive photoreceptor (which can sense light as weak as moonlight) and will induce a light-dependent repression of genes under specific promoters like RecA408 promoter and SulA408 promoter.

For the photosensor domain of this fusion protein, we chose VVD protein, the smallest photosensor protein known, which forms a rapidly exchanging dimer when excited by blue light. For the physiological function domain, we chose LexA protein, a bacteria transcription inhibitor, whose DNA binding domain rigorously requires help of the dimerization domain for its DNA binding activity. We fused these two separate domains together to form a fusion protein, which we termed our "Luminesensor". Both DNA binding domain and dimerization domain of this luminesensor was mutated at specific sites for better bio-orthogonality and higher on-off ratio.(to see the design page for details, please click here)

We then characterized this luminesensor in different ways and all the results showed that this luminesensor could response to light quite well. (to see the characterization page for details, please click here)

To learn more details about this luminesensor and the related project by Peking 2012 iGEM team, please visit our [http://2012.igem.org/Team:Peking wiki]


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 3014
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 2012
    Illegal XhoI site found at 2842
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 4401
    Illegal BsaI.rc site found at 1410
    Illegal SapI.rc site found at 4726