Difference between revisions of "Part:BBa K802004"

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===Usage and Biology===
 
  
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It can be used to transform E. coli and Bacillus strains. However, it is highly recommended to amplify the plasmid before transforming a Bacillus strain because the transformation yield is low compared to E. coli. 
 
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===Functional Parameters===
 
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The tests showed that in the NM522 E. coli strain there is bacterial growth in LB media having an Ampicillin concetration up to 1,2 mg/mL. Concerning the 168 B. subtilis strain transformed with this plasmid the maximal concentration of Erythromycin at wich there is bacterial growth is ????
 
 
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===Sequencing of the modified regions ===
 
===Sequencing of the modified regions ===
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===Usage and Biology===
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It can be used to transform E. coli and Bacillus strains. However, it is highly recommended to amplify the plasmid before transforming a Bacillus strain because the transformation yield is low compared to E. coli. 
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<br>
 +
 +
===Functional Parameters===
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The tests showed that in the NM522 E. coli strain there is bacterial growth in LB media having an Ampicillin concetration up to 1,2 mg/mL. Concerning the 168 B. subtilis strain transformed with this plasmid the maximal concentration of Erythromycin at wich there is bacterial growth is ???
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<!-- Uncomment this to enable Functional Parameter display  
 
===Functional Parameters===
 
===Functional Parameters===
 
<partinfo>BBa_K802004 parameters</partinfo>
 
<partinfo>BBa_K802004 parameters</partinfo>
 
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Revision as of 00:24, 25 September 2012

Shuttle vector for E. coli and B. subtilis

The shuttle vector of 6,5kb is Ampicillin resistant in E. coli and Erythromycin resistant in B. subtilis. It is a high plasmid copy number in both B. subtilis and E.coli. It has a polylinker containing all 4 of the iGEM sites.




Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal prefix found in sequence at 6506
    Illegal suffix found in sequence at 1
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal EcoRI site found at 6506
    Illegal NheI site found at 3377
    Illegal SpeI site found at 2
    Illegal PstI site found at 16
    Illegal NotI site found at 9
    Illegal NotI site found at 6512
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal EcoRI site found at 6506
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal prefix found in sequence at 6506
    Illegal suffix found in sequence at 2
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal prefix found in sequence at 6506
    Illegal XbaI site found at 6521
    Illegal SpeI site found at 2
    Illegal PstI site found at 16
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 3203
    Illegal BsaI.rc site found at 5190



Characterization

Transformation yield

In the NM522 E.coli strain the average yield was 3,3XE06 cells/µg.The transformed cells were selected on LB media supplemented with Ampicillin at a concentration of 100µg/mL.

In the BS168 B.subtilis strain the maximum yield was 70 cells/µg. The transformed cells were selected on LB media supplemented with Erythromycin at a concentration of 15µg/mL.

Antibiotic resistance

Given the fact that this shuttle vector is very similar to BBa_K802003, the two of them were tested in parallel. Two experiments were made in order to characterize the antibiotic resistance of the shuttle vectors: the first one on Agar plates and the second one in liquid cultures. In both cases the media was LB supplemented with Ampicillin at different concentrations.


A) Agar plates
Saturated cultures containing the shuttle vectors were diluted 10, 100, 1000 and 10000 times. A volume of 5 µL of each solution (the saturated culture and the 4 diluted solutions) deposed on the plate. The volume of the cultures containing the second shuttle vector (BBa_K802004) was adjusted in function of the OD in order to depose approximately the same number of bacterial cells.









BK37 signifies the NM522 strain transformed with BBa_K802003 (left side of each plate) and BK38 signifies the NM522 strain transformed with BBa_K802004 (right side of each plate)










As it can be seen in the picture, at 10 mg/mL (i.e. 100 times the usual selective concentration) there is bacterial growth, even for the culture diluted 10000 times (the corresponding inoculums is indicated by the number 4 written on the plates on the picture)


B) Liquid cultures

Multiple tubes containing LB media and Ampicillin at different concentrations ranging from 0 to 3 mg/mL are inoculated with bacteria containing the shuttle vectors BBa_K802003 and BBa_K802004 (or pBKL35 and pBKH36 in our collection). There were tested 3 per Ampicillin concentration for each vector. As a negative control a non resistant Ampicillin strain was used to inoculate a solution of LB media at the usual selective concentration of 100 µg/mL. The results are indicated below:

BK37 signifies the NM522 strain transformed with BBa_K802003 (pBKL35) and BK38 signifies the NM522 strain transformed with BBa_K802004 (pBKH36)



To sum up, there is no significant difference concerning the Ampicillin concentration tolerance between the two strains.



Sequencing of the modified regions

Usage and Biology

It can be used to transform E. coli and Bacillus strains. However, it is highly recommended to amplify the plasmid before transforming a Bacillus strain because the transformation yield is low compared to E. coli.

Functional Parameters

The tests showed that in the NM522 E. coli strain there is bacterial growth in LB media having an Ampicillin concetration up to 1,2 mg/mL. Concerning the 168 B. subtilis strain transformed with this plasmid the maximal concentration of Erythromycin at wich there is bacterial growth is ???