Difference between revisions of "Part:BBa K801999:Design"
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===Source===
 
===Source===
 
'''Source:'''<br>
 
'''Source:'''<br>
−
<!--Adapted from commercial system: plasmid name, system name, company name<br>-->
+
<!--Amplified from commercial system: plasmid name, system name, company name<br>-->
 +
<!--Amplified from plasmid: p???, provided by name, institute/university, country
 
<!--Preexisting BioBrick Bba_number<br>-->
 
<!--Preexisting BioBrick Bba_number<br>-->
 
<!--cDNA Clone: clone name, company name <br>-->
 
<!--cDNA Clone: clone name, company name <br>-->
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'''Literature references:'''<br>
 
'''Literature references:'''<br>
−
<!--*[http://www.ncbi.nlm.nih.gov/pubmed/20010584 Pubmed: name et al., year: title of the publication]-->
+
<!--*[http://www.ncbi.nlm.nih.gov/pubmed/20010584 Pubmed: last name et al., year: title of the publication]-->
  
 
'''Seqeuence references:'''<br>
 
'''Seqeuence references:'''<br>
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===Design Notes===
 
===Design Notes===
 
'''Other versions of this BioBrick:'''
 
'''Other versions of this BioBrick:'''
−
*The BioBrick Bba_??? encodes a yellow fluorescent protein (mVenus)derived from GFP.
+
*The BioBrick BBa_I757008 encodes a yellow fluorescent protein (mVenus)derived from GFP.
−
*The BioBrick Bba_??? encodes GFP in RFC25 for protein fusions.
+
*The BioBrick BBa_I757008 encodes GFP in RFC25 for protein fusions.
  
 
'''Cloning details:'''<br>
 
'''Cloning details:'''<br>
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===Source===
 
===Source===
 
'''Source:'''
 
'''Source:'''
−
Synthesized<br>
+
Amplified from plasmid: pSB1C3-GFP-generator, provided by A. Skerra, TU Munich, Germany
 +
'''Forward Primer:'''
 +
<code>5'- ??? - 3'</code><br>
 +
'''Reverse Primer:'''
 +
<code>5'- ??? - 3'</code>
 +
 
  
 
'''Organism:'''
 
'''Organism:'''

Revision as of 20:03, 11 September 2012

Test page for standardized BioBrick part descriptions


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]

Keywords:
Abbreviations:

Design Notes

Other versions of this BioBrick:

Cloning details:

Protein coding:

Enzymatic activity:

Cytotoxicity:

Source

Source:

Organism:

References

Literature references:

Seqeuence references:

Structure reference:


TUM12-Test page1.png


Test page for standardized BioBrick part descriptions


Keywords: fluorescent, reporter
Abbreviations:

  • GFP = Green Fluorescent Protein

Design Notes

Other versions of this BioBrick:

  • The BioBrick BBa_I757008 encodes a yellow fluorescent protein (mVenus)derived from GFP.
  • The BioBrick BBa_I757008 encodes GFP in RFC25 for protein fusions.

Cloning details:

  • Part was designed in RFC10.
  • Mutation G381A to delete XbaI restriction site
  • The correctness of part was checked by sequencing.

Protein coding:

  • Green Fluorescent Prtein [Nucleotide 1 to 714]>
  • The protein has the amino acid replacements Ser65Thr in order to increased fluorescence, photostability, and to shift the major excitation peak to 488 nm. (see Heim et all., 1995)
  • The protein encoded is posttranslationally modified by a cross-link between Ser65 and Gly67 to form the chromophor.

Enzymatic activity: none

Cytotoxicity: none

Source

Source: Amplified from plasmid: pSB1C3-GFP-generator, provided by A. Skerra, TU Munich, Germany Forward Primer: 5'- ??? - 3'
Reverse Primer: 5'- ??? - 3'


Organism:

  • Genesequence derived from Aequorea victoria
  • Codonoptimized for Escherichia coli

References

Literature references:

  • [http://www.ncbi.nlm.nih.gov/pubmed/20010584 Pubmed: Prasher, 1995: Using GFP to see the light.(Review)]
  • [http://www.ncbi.nlm.nih.gov/pubmed/7854443: Heim, 1995: Improved green fluorescence.(Reference for Chromophor)]

Seqeuence references:

  • [http://www.ncbi.nlm.nih.gov/nuccore/X83959.1 GeneBank: A.victoria mRNA for green fluorescent protein (ID:gfp1)]
  • [http://www.ebi.ac.uk/interpro/IEntry?ac=IPR011584 Interpro: Green fluorescent protein-related ]
  • [http://www.uniprot.org/uniprot/P42212 Uniprot: Green fluorescent protein]
  • [http://pfam.sanger.ac.uk/family/PF01353 Pfam: Green fluorescent protein]

Structure reference:

  • [http://www.rcsb.org/pdb/explore/explore.do?structureId=1EMA PDB: Green Fluorescent Protein from Aequorea victoria]