Difference between revisions of "Part:BBa K314011"
 
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<partinfo>BBa_K314011 short</partinfo>
 
<partinfo>BBa_K314011 short</partinfo>
  
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A protein native to Bacillus anthracis which cleaves poly-D-gamma-glutamate (PDG) and anchors it to the bacterium's peptidoglycan.
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A protein native to ''Bacillus anthracis'' which cleaves poly-γ-D-glutamate (PDGA) and anchors it to the bacterium's peptidoglycan.
  
 
===Usage and Biology===
 
===Usage and Biology===
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To test BBa _K314011, it was inserted into a pET29b+ vector using Kunkel's Mutagenesis. CapD was then produced and purified as described in the [http://2010.igem.org/Team:Washington/Protocols/50mLPurificationCapD UW 2010 iGEM Team's Small Scale Protein Purification Protocol]. The purified protein was then tested for activity against [https://parts.igem.org/Part:BBa_K314012 CapD_CP]. For a detailed description of the assay, please see the [http://2010.igem.org/Team:Washington/Protocols/EnzymeAssayCapD 2010 UW iGEM wiki]. The resulting data is shown below.
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To test BBa _K314011, we first inserted it into a pET29b+ vector using [http://2010.igem.org/Team:Washington/Protocols/KunkelCapD Kunkel Mutagenesis]. CapD was then produced and purified as described in the [http://2010.igem.org/Team:Washington/Protocols/50mLPurificationCapD UW 2010 iGEM Team's Small Scale Protein Purification Protocol]. The purified protein was then tested for activity against [https://parts.igem.org/Part:BBa_K314012 CapD_CP]. For a detailed description of the assay, please see the [http://2010.igem.org/Team:Washington/Protocols/EnzymeAssayCapD 2010 UW iGEM wiki]. A protein gel was also run to determine physical qualities. The resulting data is shown below.
  
 
<gallery heights=300px widths=400>
 
<gallery heights=300px widths=400>
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image:CapD_MM.png
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image:CapD_MM.png | The substrate vs. reaction rate curve above plots the Poly-d-gamma-glutamate (PDG) cleaved per enzyme per hour (y-axis) as a function of substrate concentration (x-axis). As observed in the curve above, high substrate concentrations suffered from substrate inhibition under the conditions our enzyme was assayed.
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image:CapDGel.png
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image:CapDGel.png|Protein gel data above shows the three bands seen for CapD. This makes quantifying active CapD extremely difficult when correcting for protein concentration.
 
</gallery>
 
</gallery>
  
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[[image:Kinetic_CapD.png]]
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[[image:Kinetic_CapD.png|1600px|thumb|center| Kinetic constants, ''k''cat and Km, taken from our plotted curves are shown in the table above.]]
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The substrate vs. reaction rate curve above plots the PDG cleaved per enzyme per hour (y-axis) as a function of substrate concentration (x-axis). As observed in the curve above, high substrate concentrations suffered from substrate inhibition under the conditions our enzyme was assayed. Kinetic constants, ''k''cat and Km, taken from our plotted curves are shown in the table above.  
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Protein gel data above shows the three bands seen for CapD. This makes CapD extremely difficult to accurately quantify when correcting for protein concentration.
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<!-- Add more about the biology of this part here
 
<!-- Add more about the biology of this part here

Latest revision as of 00:14, 14 September 2011

CapD

A protein native to Bacillus anthracis which cleaves poly-γ-D-glutamate (PDGA) and anchors it to the bacterium's peptidoglycan.

Usage and Biology

To test BBa _K314011, we first inserted it into a pET29b+ vector using [http://2010.igem.org/Team:Washington/Protocols/KunkelCapD Kunkel Mutagenesis]. CapD was then produced and purified as described in the [http://2010.igem.org/Team:Washington/Protocols/50mLPurificationCapD UW 2010 iGEM Team's Small Scale Protein Purification Protocol]. The purified protein was then tested for activity against CapD_CP. For a detailed description of the assay, please see the [http://2010.igem.org/Team:Washington/Protocols/EnzymeAssayCapD 2010 UW iGEM wiki]. A protein gel was also run to determine physical qualities. The resulting data is shown below.

  • The substrate vs. reaction rate curve above plots the Poly-d-gamma-glutamate (PDG) cleaved per enzyme per hour (y-axis) as a function of substrate concentration (x-axis). As observed in the curve above, high substrate concentrations suffered from substrate inhibition under the conditions our enzyme was assayed.

  • Protein gel data above shows the three bands seen for CapD. This makes quantifying active CapD extremely difficult when correcting for protein concentration.

Kinetic constants, kcat and Km, taken from our plotted curves are shown in the table above.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal XhoI site found at 1540
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]