Difference between revisions of "Part:BBa K339007"

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__NOTOC__

<partinfo>BBa_K339007 short</partinfo>

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~~c j~~

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cpxR promoter upstream of an RFP generator. \

<!-- Add more about the biology of this part here

===Usage and Biology===

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~~~~

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This part was used in order to characterixe the cpxR promoter, specifically its repsonse to folding and misfolding proteins in the cytoplasm.

<span class='h3bb'>Sequence and Features</span>

<partinfo>BBa_K339007 SequenceAndFeatures</partinfo>

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===Functional Parameters===

<partinfo>BBa_K339007 parameters</partinfo>

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+

'''Characterization of the cpxR promoter's response to folding and misfolding proteins through co-transformation of MalE and MalE31 coupled to arabinose promoter in cpxR reporter competent cells- Unversity of Calgary 2010

+

'''

+

<h3><u>Protocol:</u></h3>

+

<p>

+

Arabinose inducible promoter (I0500) coupled with standard ribosome binding site (B0034) and the respective maltose binding protein were transformed into competent cells containing pCpxR coupled with RFP generator (I13507). These cells were plated and incubated overnight. Colonies from each of the plates were selected and overnight cultures were prepared at 37 C. These 5 ml overnight cultures were then sub-cultured in 20 ml broth. These were shaken for 6-8 hours and aliquoted into 5 ml cultures and induced with varying levels of arabinose(percent). This was incubated in the shaker for 12-14 hours and RFP output was measured using 555 excitation and 632 nm emission frequency.</p>

+

<h3><u>Results</u></h3>

+

"http://i872.photobucket.com/albums/ab287/iGEMCalgary_2010/Unititled-7.png"

+

<p>Figure 2: RFP output produced by the CpxR-I13507 system when co-transfected with I0500-B0034-MalE (red) and I0500-B0034-MalE31 (blue) at different arabinose concentrations. RFP levels were measured at 555 nm excitation and 632 nm emission frequencies</p>

+

"http://i872.photobucket.com/albums/ab287/iGEMCalgary_2010/lineofbestfitCpxR.png"

+

<p>Figure 3: RFP output produced by the CpxR-I13507 system when co-transfected with I0500-B0034-MalE (red) and I0500-B0034-MalE31 (blue) at different arabinose concentrations. RFP levels were measured at 555 nm excitation and 632 nm emission frequencies.</p>

+

<h3><u>Discussion of Results and Conclusion</u></h3>

+

<p>

+

Figure 2 and 3 indicate the RFP output normalized with growth ratio (OD) at different levels of arabinose. Figure 1 shows that CpxR-I13507 is activated at the highest level when MalE31, the periplasmic misfolder, is expressed. This occurs around 0.2% arabinose concentration. Similar trends are observed in the case of MalE which is a periplasmic folder. MalE and MalE31 activate the system at different levels. MalE31 has similar trends to MalE but has a higher level of RFP expression. These results prove that MalE and MalE31 can both activate the CpxR system however, MalE31, which misfolds, activates it more rapidly and at a lower level of arabinose concentration compared to MalE. If the line of best fit is studied, it is seen that MalE has very minimal level of Cpx activation. Whereas, malE31 has a linear regression which flattens out as the system reaches its upper threshold of detection. Biologically, this could mean that the MalE31 is activated at levels that saturate the cellular chaperones and cause the system to reach its threshold level of proteolytic and chaperone activities. Another interesting pattern observed is the fact that when MalE is constructed with CpxR-I13507 on the same plasmid (Green), the cell RFP output is much lower compared to cells co-transfected with CpxR-I13507 and I0500-B0034 –MalE. This indicates that insertion of high copy plasmid also induces stress in the periplasmic region of the cell consequently inducing the activation of CpxR system.

+

</p>

+

<p>

+

@@ Line 1: / Line 1: @@
 __NOTOC__
 <partinfo>BBa_K339007 short</partinfo>
-c j
+cpxR promoter upstream of an RFP generator.  \
 <!-- Add more about the biology of this part here
 ===Usage and Biology===
-<!-- -->
+This part was used in order to characterixe the cpxR promoter, specifically its repsonse to folding and misfolding proteins in the cytoplasm.
 <span class='h3bb'>Sequence and Features</span>
 <partinfo>BBa_K339007 SequenceAndFeatures</partinfo>
@@ Line 16: / Line 15: @@
 ===Functional Parameters===
 <partinfo>BBa_K339007 parameters</partinfo>
-<!-- -->
+'''Characterization of the cpxR promoter's response to folding and misfolding proteins through co-transformation of MalE and MalE31 coupled to arabinose promoter in cpxR reporter competent cells- Unversity of Calgary 2010
+'''
+<h3><u>Protocol:</u></h3>
+<p>
+Arabinose inducible promoter (I0500) coupled with standard ribosome binding site (B0034) and the respective maltose binding protein were transformed into competent cells containing pCpxR coupled with RFP generator (I13507). These cells were plated and incubated overnight. Colonies from each of the plates were selected and overnight cultures were prepared at 37 C. These 5 ml overnight cultures were then sub-cultured in 20 ml broth. These were shaken for 6-8 hours and aliquoted into 5 ml cultures and induced with varying levels of arabinose(percent). This was incubated in the shaker for 12-14 hours and RFP output was measured using 555 excitation and 632 nm emission frequency.</p>
+<h3><u>Results</u></h3>
+"http://i872.photobucket.com/albums/ab287/iGEMCalgary_2010/Unititled-7.png"
+<p>Figure 2: RFP output produced by the CpxR-I13507 system when co-transfected with I0500-B0034-MalE (red) and I0500-B0034-MalE31 (blue) at different arabinose concentrations. RFP levels were measured at 555 nm excitation and 632 nm emission frequencies</p>
+"http://i872.photobucket.com/albums/ab287/iGEMCalgary_2010/lineofbestfitCpxR.png"
+<p>Figure 3: RFP output produced by the CpxR-I13507 system when co-transfected with I0500-B0034-MalE (red) and I0500-B0034-MalE31 (blue) at different arabinose concentrations. RFP levels were measured at 555 nm excitation and 632 nm emission frequencies.</p>
+<h3><u>Discussion of Results and Conclusion</u></h3>
+<p>
+Figure 2 and 3 indicate the RFP output normalized with growth ratio (OD) at different levels of arabinose. Figure 1 shows that CpxR-I13507 is activated at the highest level when MalE31, the periplasmic misfolder, is expressed. This occurs around 0.2% arabinose concentration. Similar trends are observed in the case of MalE which is a periplasmic folder. MalE and MalE31 activate the system at different levels. MalE31 has similar trends to MalE but has a higher level of RFP expression. These results prove that MalE and MalE31 can both activate the CpxR system however, MalE31, which misfolds, activates it more rapidly and at a lower level of arabinose concentration compared to MalE. If the line of best fit is studied, it is seen that MalE has very minimal level of Cpx activation. Whereas, malE31 has a linear regression which flattens out as the system reaches its upper threshold of detection. Biologically, this could mean that the MalE31 is activated at levels that saturate the cellular chaperones and cause the system to reach its threshold level of proteolytic and chaperone activities. Another interesting pattern observed is the fact that when MalE is constructed with CpxR-I13507 on the same plasmid (Green), the cell RFP output is much lower compared to cells co-transfected with CpxR-I13507 and I0500-B0034 –MalE. This indicates that insertion of high copy plasmid also induces stress in the periplasmic region of the cell consequently inducing the activation of CpxR system.
+</p>
+<p>
+<Br><Br>