View source for User:Scmohr/Documentation Score

=ESSENTIAL ITEMS FOR ALL PARTS=

==Main Page==
<SPAN style= 'color:red'>'''(10 points)'''</span> <SPAN style= 'color:blue'>'''(+1)'''</span>

Answers the question: <SPAN style= 'color:green'>'''"What is it?"'''</span>

0. Designer/iGEM team.* <SPAN style= 'color:red'>'''(1)'''</span>
 
1. Part number. (alternatively “Accession number”)* <SPAN style= 'color:red'>'''(0)'''</span>
 
2. Short name.* <SPAN style= 'color:red'>'''(1)'''</span>
 
3. Extended name. (alternatively an informative title)* <SPAN style= 'color:red'>'''(2)'''</span>
 
4. Origin (biological species if available, otherwise name the source: "supplied by __________" or "designed, based on ____________").* <SPAN style= 'color:red'>'''(3)'''</span>

5. A short abstract that tells (a) what the part does (function), (b) how it works (mechanism) and (c) why you made it (purpose).* <SPAN style= 'color:red'>'''(3)'''</span>

6. Dependencies: other parts, special materials, cofactors, chassis, etc. <SPAN style= 'color:blue'>'''(1)'''</span> (if applicable)

==Design Page==
<SPAN style= 'color:red'>'''(10 points)'''</span> <SPAN style= 'color:blue'>'''(+5)'''</span>

Answers the question: <SPAN style= 'color:green'>'''"How did you make it?"'''</span>

7. Raison d’être for constructing the part.* <SPAN style= 'color:red'>'''(3)'''</span>
Links to related parts from the same project. <SPAN style= 'color:blue'>'''(2)'''</span>
[Details in addition to those under items (5) and (6).]
 
8. DNA sequence without the BioBrick ends.* <SPAN style= 'color:red'>'''(0)'''</span>

9. Primers used (if part was created using PCR).* <SPAN style= 'color:red'>'''(2)'''</span>

10. Synthesis details (if part was created by DNA synthesis*). <SPAN style= 'color:red'>'''(1)'''</span>
 
11. Special design features: (a) insertion/removal of BioBrick cloning sites, (b) codon optimization, (c) reverse orientation, (d) added tags…* <SPAN style= 'color:blue'>'''(2)'''</span>

13. Graphical sequence bar ''with all appropriate feature annotations.'' <SPAN style= 'color:red'>'''(1)'''</span>
 
14. One-to-three references to literature* on the part’s biological function and uses in synthetic biology. Frequently there is a key reference reporting on the first use or design of a modified version of the protein (see entries under “Reporters”). If no published references are available, cite other sources used (such as online, open-access textbooks, Open Wetware pages, etc.)  <SPAN style= 'color:red'>'''(2)'''</span>
 
15. Difficulties/pitfalls encountered in the design process. Unworkable designs, necessary revisions etc. If everything worked exactly as planned, say so!* <SPAN style= 'color:red'>'''(1)'''</span>

16.? List all applicable patents and materials transfer agreements (MTAs). [Give link to disclaimer page on IP & iGEM issues.] <SPAN style= 'color:blue'>'''(1)'''</span>

==Experience Page==
<SPAN style= 'color:red'>'''(3 points)'''</span> <SPAN style= 'color:blue'>'''(+4)'''</span>

Answers the question: <SPAN style= 'color:green'>'''"How well does it work?"'''</span>

17. Summary of actual applications to date in originating laboratory.* <SPAN style= 'color:red'>'''(3)'''</span>

18. Measurements or tests of part. Include efficiency. <SPAN style= 'color:blue'>'''(2)'''</span>

19. Uploaded data, figures etc. can be put on the Registry wiki and linked here. <SPAN style= 'color:blue'>'''(2)'''</span>

==Hard Information Page==
<SPAN style= 'color:red'>'''(2 points)'''</span> <SPAN style= 'color:blue'>'''(+1)'''</span>

Gives <SPAN style= 'color:green'>'''reference data.'''</span>

20. Sequence (FASTA format).*
 
21. Exact source of the original sequence(s) used to construct the part. GenBank accession number (“VERSION”) and/or “GI” (aka “gi”) number if available. Otherwise any available published sequence or other source of information, including experimental sequence reads (which can be put on the Registry wiki and linked here).* <SPAN style= 'color:red'>'''(2)'''</span>

22. More features (e.g., exact details of modified sequences). <SPAN style= 'color:blue'>'''(1)'''</span>

==POSSIBLE ENHANCEMENTS==

Suggestions about <SPAN style= 'color:green'>'''how to liven it up -- use visual materials!'''</span>)

=Main Page=

1. Structure cartoon(s). PDB_IDs. <SPAN style= 'color:blue'>'''(2)'''</span>

2. Figures relating to the function and/or physical characteristics of the part. (Include forward and reverse efficiencies if known.) <SPAN style= 'color:blue'>'''(2)'''</span>

==Experience Page==

3. Tables of measurements. <SPAN style= 'color:blue'>'''(3)'''</span>

4. Figures depicting functional output. <SPAN style= 'color:blue'>'''(2)'''</span>
 
5. Links to additional databases. <SPAN style= 'color:blue'>'''(2)'''</span>