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Coding

Part:BBa_K1486056:Design

Designed by: iGem EPFL 2014   Group: iGEM14_EPF_Lausanne   (2014-10-07)


CxpR & Split IFP1.4 [Cterm + Cterm][2]


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 1205
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 3673
    Illegal BamHI site found at 1144
    Illegal XhoI site found at 1297
    Illegal XhoI site found at 2473
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 979
    Illegal AgeI site found at 1708
    Illegal AgeI site found at 2884
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI site found at 961


Design Notes

Site-directed mutagenesis was used to remove the restriction sites in the sequence. It is to be noted that this construct makes use of an Arabinose-inducible promoter, a standard Elowitz RBS, as well as a flexible linker 2 x (Gly-Gly-Gly-Gly-Ser) between CpxR and the two split parts of the IFP WARNING: It is also to be noted that basic parts are submitted with a start codon and a stop codon. To make a composite part, START and STOP codons of the basics parts may have been removed, as we only want a START codon at the beginning of a cds and a STOP codon at the end of a cds. You should consider it when looking at the part sequence.

Source

http://www.addgene.org/browse/article/8177/ which was then mutated by us.

References

Michnick, S., Tchekanda, E., & Sivanesan, D. (2014, April 20). [http://www.nature.com/nmeth/journal/v11/n6/full/nmeth.2934.html An infrared reporter to detect spatiotemporal dynamics of protein-protein interactions.] Nature Methods, 6-6.