Coding

Part:BBa_K2656014

Designed by: Adrián Requena Gutiérrez   Group: iGEM18_Valencia_UPV   (2018-09-22)

mRFP1 Coding Sequence

domestication.
Figure 1. DNA basic parts domestication. Third construction refers to CDS GB domestication.

Part BBa_K2656014 is the monomeric Red Fluorescent Protein 1 coding sequence BBa_E1010 adapted into the Golden Braid assembly method. Thus, this sequence is both compatible with the BioBrick and GoldenBraid 3.0. grammar.

This coding sequence can be combined with other Golden Braid compatible parts from our Valencia UPV IGEM 2018 Printeria Collection to assemble transcriptional units in a one-step BsaI reaction with the Golden Gate assembly protocol .

The characterization of this protein (and by extension of all the other part that codify for the mRFP1) was performed with our transcriptional unit BBa_K2656109. This transcriptional unit was assembled in a GoldenBraid alpha 1 plasmid including the following parts:

domestication.
Picture 1. E. coli transformed with BBa_K2656109

In order to carry out a correct characterization of the protein and to be able to use it to make measurements of the different transcriptional units that we assembled with it, we obtained the emission and excitation spectra in the conditions of our equipment. By using this protocol with the parameters of Table 1, Figure 1 was obtained.


Parameter Value
Number of samples 3
Excitation Wavelength measurement range 1 (nm) [450-620]
Excitation Wavelength measurement range 2 (nm) [620-700]
Emission wavelenght 1 (nm) 650
Emission wavelenght 2 (nm) 590
Emission Wavelength measurement range (nm) [565-700]
Excitation wavelenght (nm) 540
Gain (G) 70
Table 1. Parameters used to obtain the spectra


mRFP spectra.
Figure 2. mRFP emission and excitation spectra


Sequence and Features

Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 556
    Illegal AgeI site found at 668
  • 1000
    COMPATIBLE WITH RFC[1000]


[edit]
Categories
//chassis/prokaryote/ecoli
//function/reporter
//function/reporter/fluorescence
//test
Parameters
None